Detailed information of component protein
Summary
| Component ID | T6CP015923 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01281  (Type i1) |
| Strain | Vibrio coralliilyticus OCN008 |
| Replicon | chromosome II |
| Sequence | Protein sequence (264 a.a.); Nucleotide sequence (792 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | G3U99_RS23905 |
| Coordinate (Strand) | 1655807..1656598 (+) |
| NCBI ID | WP_021457351.1 |
| RefSeq | NZ_CP048694 |
| Uniprot ID | UPI000390E132 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 3.2e-51 | 47..247 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-228 | MSYIDNDVTVVLFQPEPGKPMEVMPAPDLSRNIAVKDPNIEKMGVNPLVDQFSWLIASLSCMSSIPWLEDPMPFREQIAREIRKGERKLNEMEVDRASILVIRYCLCAALDEAVCRQEWGANSNWSQNSLLAEFHNETSGGDKFFTILERLKADPRRYRYVIELLYLLIQLGFQGKYGREERGQEKLADIANTIYRLIKDERLAENEKVSLVNLKAKYLKQPLKRVIP |
| Transmembrane helix | 229-251 | PRVTLGVSAIVFSIMYAATYFII |
| Outside | 252-263 | DTNFQNLLANFQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9927 | - | - |
Protein sequence: 264 a.a.
>T6CP015923 NZ_CP048694:1655807-1656598 [Vibrio coralliilyticus OCN008] [TssL]
MSYIDNDVTVVLFQPEPGKPMEVMPAPDLSRNIAVKDPNIEKMGVNPLVDQFSWLIASLSCMSSIPWLEDPMPFREQIAR
EIRKGERKLNEMEVDRASILVIRYCLCAALDEAVCRQEWGANSNWSQNSLLAEFHNETSGGDKFFTILERLKADPRRYRY
VIELLYLLIQLGFQGKYGREERGQEKLADIANTIYRLIKDERLAENEKVSLVNLKAKYLKQPLKRVIPPRVTLGVSAIVF
SIMYAATYFIIDTNFQNLLANFQ*
MSYIDNDVTVVLFQPEPGKPMEVMPAPDLSRNIAVKDPNIEKMGVNPLVDQFSWLIASLSCMSSIPWLEDPMPFREQIAR
EIRKGERKLNEMEVDRASILVIRYCLCAALDEAVCRQEWGANSNWSQNSLLAEFHNETSGGDKFFTILERLKADPRRYRY
VIELLYLLIQLGFQGKYGREERGQEKLADIANTIYRLIKDERLAENEKVSLVNLKAKYLKQPLKRVIPPRVTLGVSAIVF
SIMYAATYFIIDTNFQNLLANFQ*
Nucleotide sequence: 792 bp
>T6CP015923 NZ_CP048694:1655807-1656598 [Vibrio coralliilyticus OCN008] [TssL]
ATGAGTTACATAGATAATGATGTAACCGTAGTACTGTTTCAGCCTGAGCCGGGCAAACCGATGGAGGTTATGCCCGCGCC
TGATCTTTCAAGAAACATAGCGGTTAAAGATCCAAACATTGAGAAGATGGGGGTTAACCCTCTGGTTGATCAGTTTTCTT
GGTTGATTGCTAGTTTGTCTTGTATGTCTTCTATCCCATGGTTAGAAGACCCTATGCCATTTAGGGAACAGATCGCTCGA
GAGATCCGCAAAGGTGAGCGTAAGTTGAATGAAATGGAAGTTGACCGTGCGTCTATTCTGGTTATTCGCTATTGCTTATG
TGCTGCTCTTGATGAAGCGGTATGCCGCCAGGAGTGGGGGGCAAACAGTAATTGGAGCCAAAATAGCTTGCTGGCAGAGT
TTCACAATGAAACATCAGGTGGTGATAAGTTTTTCACGATCTTAGAGCGCTTGAAGGCAGATCCACGACGCTACCGTTAT
GTTATCGAGTTGCTTTATCTGCTTATTCAGCTTGGCTTTCAAGGTAAATATGGTCGTGAAGAGCGTGGACAGGAAAAGCT
GGCGGATATTGCCAATACAATTTATCGACTTATAAAAGATGAAAGATTGGCGGAAAATGAAAAGGTGTCTTTGGTTAATC
TCAAAGCGAAATACCTAAAACAGCCTTTGAAGCGGGTGATTCCACCCCGAGTGACCTTAGGTGTTTCAGCCATTGTTTTT
TCCATCATGTACGCTGCAACGTATTTTATCATTGATACTAATTTCCAAAACCTACTTGCCAACTTCCAGTAA
ATGAGTTACATAGATAATGATGTAACCGTAGTACTGTTTCAGCCTGAGCCGGGCAAACCGATGGAGGTTATGCCCGCGCC
TGATCTTTCAAGAAACATAGCGGTTAAAGATCCAAACATTGAGAAGATGGGGGTTAACCCTCTGGTTGATCAGTTTTCTT
GGTTGATTGCTAGTTTGTCTTGTATGTCTTCTATCCCATGGTTAGAAGACCCTATGCCATTTAGGGAACAGATCGCTCGA
GAGATCCGCAAAGGTGAGCGTAAGTTGAATGAAATGGAAGTTGACCGTGCGTCTATTCTGGTTATTCGCTATTGCTTATG
TGCTGCTCTTGATGAAGCGGTATGCCGCCAGGAGTGGGGGGCAAACAGTAATTGGAGCCAAAATAGCTTGCTGGCAGAGT
TTCACAATGAAACATCAGGTGGTGATAAGTTTTTCACGATCTTAGAGCGCTTGAAGGCAGATCCACGACGCTACCGTTAT
GTTATCGAGTTGCTTTATCTGCTTATTCAGCTTGGCTTTCAAGGTAAATATGGTCGTGAAGAGCGTGGACAGGAAAAGCT
GGCGGATATTGCCAATACAATTTATCGACTTATAAAAGATGAAAGATTGGCGGAAAATGAAAAGGTGTCTTTGGTTAATC
TCAAAGCGAAATACCTAAAACAGCCTTTGAAGCGGGTGATTCCACCCCGAGTGACCTTAGGTGTTTCAGCCATTGTTTTT
TCCATCATGTACGCTGCAACGTATTTTATCATTGATACTAATTTCCAAAACCTACTTGCCAACTTCCAGTAA