Detailed information of component protein


Summary

Component ID T6CP015922
Component protein type TssK
T6SS ID (Type) T6SS01281 experimental (Type i1)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome II
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS23900
Coordinate (Strand) 1654485..1655810 (+)
NCBI ID WP_021457350.1
RefSeq NZ_CP048694
Uniprot ID UPI0003911620
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.6e-136 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQFDRAQTKLSTMLYASSTPLHWGVNRIEINTELLTQGKIAVTRAIGVLQDKTPFDLPLLAEVPDVKEVDPSITDKVIYLCCPLPSEREELFGSDKDGARYLVRQQDAVDAVYESEDTANISVGQLKFRLMYEDEDRSAYTAIPILKVSEVKPDGSVVLDDRYIPTCIDINASEVLSKFTNEFASMLKHRAESIVERLGTVDQQGVSTVSDFMLLQALNRYEPLFWHFSSVEGVHPESLYRTLLQAEGELSTLCSASRRPPEFIEYNHGDLTSCLSRTLDNAKRTLSVMSEQRAIPLTLQEQNFGIRTAVIPDKKVVESATFILAVKADVTLDILHTQFVSQTKIGSIDNIRDLINLQLPGIGIKPMPVVPRALPYHAGYTYFELDRASDEWAALESASAIAVHVSGDFANLSLQLWAVRV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 442 a.a.    

>T6CP015922 NZ_CP048694:1654485-1655810 [Vibrio coralliilyticus OCN008] [TssK]
MSLYNPVVWQDGMFMKPQHFQQFDRAQTKLSTMLYASSTPLHWGVNRIEINTELLTQGKIAVTRAIGVLQDKTPFDLPLL
AEVPDVKEVDPSITDKVIYLCCPLPSEREELFGSDKDGARYLVRQQDAVDAVYESEDTANISVGQLKFRLMYEDEDRSAY
TAIPILKVSEVKPDGSVVLDDRYIPTCIDINASEVLSKFTNEFASMLKHRAESIVERLGTVDQQGVSTVSDFMLLQALNR
YEPLFWHFSSVEGVHPESLYRTLLQAEGELSTLCSASRRPPEFIEYNHGDLTSCLSRTLDNAKRTLSVMSEQRAIPLTLQ
EQNFGIRTAVIPDKKVVESATFILAVKADVTLDILHTQFVSQTKIGSIDNIRDLINLQLPGIGIKPMPVVPRALPYHAGY
TYFELDRASDEWAALESASAIAVHVSGDFANLSLQLWAVRV*

  Nucleotide sequence: 1326 bp    

>T6CP015922 NZ_CP048694:1654485-1655810 [Vibrio coralliilyticus OCN008] [TssK]
ATGTCATTATATAATCCTGTAGTGTGGCAAGATGGCATGTTCATGAAACCACAGCATTTTCAGCAATTTGATCGTGCTCA
GACAAAGCTAAGCACCATGCTGTACGCCAGCAGCACACCACTGCATTGGGGTGTGAATCGCATTGAGATTAACACTGAAC
TGCTGACTCAAGGCAAGATCGCGGTCACTCGAGCAATTGGTGTTCTTCAAGATAAGACGCCTTTTGACTTGCCGCTTTTA
GCTGAGGTACCAGACGTAAAGGAAGTCGATCCTTCGATTACAGACAAAGTGATTTACCTTTGTTGTCCATTACCTTCTGA
AAGAGAAGAGTTGTTCGGCTCTGACAAAGATGGGGCTCGTTACCTTGTCCGTCAGCAAGATGCCGTTGATGCGGTTTACG
AAAGTGAAGACACGGCTAATATTTCAGTTGGTCAACTTAAGTTCCGATTAATGTACGAAGATGAGGATCGTAGTGCCTAC
ACTGCGATTCCAATACTCAAAGTGTCAGAAGTAAAACCTGACGGAAGTGTCGTGCTTGATGATCGCTACATTCCGACTTG
TATTGACATCAACGCGTCAGAAGTACTTAGCAAGTTTACCAATGAATTCGCTTCGATGTTAAAGCACCGCGCGGAATCGA
TTGTCGAACGCCTCGGTACCGTTGACCAGCAAGGTGTATCAACGGTCTCTGATTTTATGCTGTTACAAGCGCTCAACCGT
TATGAACCTTTATTCTGGCACTTCTCCAGCGTTGAAGGTGTGCACCCTGAATCGCTTTATCGTACTTTGCTTCAAGCCGA
AGGCGAGCTGTCGACACTTTGCTCAGCATCCCGCAGGCCTCCAGAGTTTATCGAGTACAATCATGGTGACCTCACCAGTT
GTTTGTCTCGTACTCTGGACAATGCTAAGCGCACGTTAAGTGTTATGTCTGAACAACGCGCAATACCACTGACACTACAA
GAGCAGAACTTCGGCATTCGTACTGCGGTTATCCCAGATAAGAAAGTGGTTGAATCCGCGACCTTTATTCTTGCGGTTAA
AGCCGATGTCACCCTTGATATTCTGCACACTCAATTTGTTAGTCAGACTAAGATTGGCTCTATCGATAATATCCGTGATC
TCATCAATCTTCAGCTTCCAGGTATCGGTATCAAGCCAATGCCAGTGGTACCGCGAGCGTTGCCTTATCATGCGGGCTAT
ACATACTTTGAACTCGACCGAGCGAGTGATGAGTGGGCAGCATTGGAGAGCGCTTCTGCGATTGCGGTTCATGTTTCTGG
TGACTTTGCAAACTTATCGTTGCAACTATGGGCGGTTAGAGTATGA