Detailed information of component protein


Summary

Component ID T6CP015919
Component protein type TssA
T6SS ID (Type) T6SS01281 experimental (Type i1)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome II
Sequence Protein sequence (436 a.a.); Nucleotide sequence (1308 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS23880
Coordinate (Strand) 1650144..1651451 (-)
NCBI ID WP_165579910.1
RefSeq NZ_CP048694
Uniprot ID UPI0013F3BAD8
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 4.4e-25 1..109
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-225 VDEHTPCGVNPNNLEEFEEIKRQINNINKVTGRVSWKKVQQLSKDILKHKSKDLRCGCYYAVASAHNDGLSGFVDGLNSILDLCVVYWSSSYPEVSKASARMGAFEWLVEHAERRAKQFNVTVEDRAMLEAGHRVCLRIEEELRLHYGHKAPSLGIIRRLFSQYIDEIKELEDKQEAAQKKAKEQKESQQKMPSPSVPGGITVNVKPPVAGKPSPVETEAEKSRS
Transmembrane helix 226-248 TIWTVAAVVGLFLFALSAYYIHN
Inside 249-435 DKVLNSYQQKIASNNIPALLEVTEDLKRENKDTLNKLKEPLIRTVDSIVYDLDKSPEKIGQISALVSITDNLSELYSDSSSVKVLSTELQRVKLQLEKDFDDITSRFSRARTAIANLNRDSKDVNTKLAYQYSNSLFPLLGRIEYAEKTNSAEELDRSLILINVYLHKIAQLKATQENKSLNQVVAE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9847 - -


  Protein sequence: 436 a.a.    

>T6CP015919 NZ_CP048694:c1651451-1650144 [Vibrio coralliilyticus OCN008] [TssA]
VDEHTPCGVNPNNLEEFEEIKRQINNINKVTGRVSWKKVQQLSKDILKHKSKDLRCGCYYAVASAHNDGLSGFVDGLNSI
LDLCVVYWSSSYPEVSKASARMGAFEWLVEHAERRAKQFNVTVEDRAMLEAGHRVCLRIEEELRLHYGHKAPSLGIIRRL
FSQYIDEIKELEDKQEAAQKKAKEQKESQQKMPSPSVPGGITVNVKPPVAGKPSPVETEAEKSRSTIWTVAAVVGLFLFA
LSAYYIHNDKVLNSYQQKIASNNIPALLEVTEDLKRENKDTLNKLKEPLIRTVDSIVYDLDKSPEKIGQISALVSITDNL
SELYSDSSSVKVLSTELQRVKLQLEKDFDDITSRFSRARTAIANLNRDSKDVNTKLAYQYSNSLFPLLGRIEYAEKTNSA
EELDRSLILINVYLHKIAQLKATQENKSLNQVVAE*

  Nucleotide sequence: 1308 bp    

>T6CP015919 NZ_CP048694:c1651451-1650144 [Vibrio coralliilyticus OCN008] [TssA]
GTGGACGAGCATACTCCTTGTGGAGTTAACCCAAACAATCTCGAAGAGTTTGAGGAAATAAAACGGCAGATCAATAATAT
CAATAAGGTTACTGGGCGCGTATCGTGGAAAAAAGTACAGCAGTTATCTAAAGATATTCTTAAGCATAAAAGTAAAGATT
TACGTTGCGGGTGCTATTATGCCGTAGCTTCTGCACACAATGACGGCCTTAGCGGATTTGTTGATGGGCTAAACTCTATA
CTCGATTTATGCGTAGTGTATTGGTCGTCTTCATATCCTGAAGTTTCGAAAGCAAGCGCGCGAATGGGTGCTTTTGAATG
GCTGGTCGAACATGCCGAAAGACGTGCAAAGCAATTCAATGTCACTGTTGAAGATAGAGCAATGCTTGAGGCTGGGCACA
GAGTATGTCTTCGTATTGAAGAAGAATTACGACTTCACTATGGTCACAAAGCACCTTCTCTAGGCATTATCAGACGATTG
TTTAGTCAGTATATCGACGAAATCAAAGAGCTCGAAGATAAGCAAGAAGCTGCTCAGAAAAAAGCCAAAGAGCAGAAAGA
ATCCCAACAAAAAATGCCTAGTCCTTCCGTACCGGGTGGTATCACAGTTAATGTAAAACCACCTGTAGCAGGGAAACCTT
CTCCTGTTGAAACGGAAGCCGAAAAAAGCCGCTCGACAATTTGGACCGTTGCCGCTGTTGTTGGTTTATTTTTGTTCGCG
TTGAGTGCCTACTATATCCACAATGATAAGGTTTTAAATAGCTACCAGCAGAAAATTGCATCGAACAATATTCCTGCACT
TCTTGAGGTTACAGAAGACTTAAAGCGTGAAAACAAAGACACACTTAATAAGCTTAAAGAACCATTAATTAGAACGGTAG
ATTCTATTGTTTACGACCTAGATAAGTCCCCAGAAAAAATAGGTCAAATATCAGCCTTGGTTAGCATTACAGATAATTTA
TCTGAGCTTTATTCAGACTCCTCCTCTGTTAAAGTACTATCCACTGAACTCCAACGAGTCAAGTTACAGCTAGAAAAAGA
CTTTGACGATATAACTTCACGTTTTTCACGCGCCCGAACAGCAATTGCTAATCTAAATCGTGATTCTAAAGATGTGAATA
CGAAACTCGCTTATCAGTATAGCAACTCATTATTCCCACTACTTGGACGAATAGAGTACGCAGAAAAAACAAACAGCGCT
GAAGAACTCGATCGCTCTCTAATTTTAATCAACGTTTACTTGCATAAAATCGCACAACTTAAGGCGACGCAAGAGAATAA
ATCATTAAACCAAGTCGTGGCTGAATAA