Detailed information of component protein
Summary
| Component ID | T6CP015918 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS01281  (Type i1) |
| Strain | Vibrio coralliilyticus OCN008 |
| Replicon | chromosome II |
| Sequence | Protein sequence (1132 a.a.); Nucleotide sequence (3396 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 1646746..1650141 (-) |
| NCBI ID | WP_165579909.1 |
| RefSeq | NZ_CP048694 |
| Uniprot ID | UPI0010C391E4 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-8 | MLKNIIRH |
| Transmembrane helix | 9-31 | PIFISTLLALVLIGGLTAAYFLY |
| Outside | 32-40 | PETVSTNIL |
| Transmembrane helix | 41-60 | YIGIAAIALVLCAYQLVLFF |
| Inside | 61-400 | KKRKQNRDQQLETEEEALSLVLRPLLVGSKKKPIYLMIGNKAAGKKQFLTSSNAIKSIDTSRTKKNDFFEWYESDEAVYLKPDQRLVFQEVSAADSLLWDTMVAEVIRSRPRKPFAGCLFFTDLEFLIISEEEQIDYALTALIDRITSICDQTNTALPVYMVVSKLDKLQGFKEYVQLSPLKHNVEYLSIALKDAKGVLVDYYRDSFNNLVKVIEKNALDSTSQSNDTKEKQAILSFPKQLEICQKEVEYVVQRLSEVNRGAYFIDLRELFFSSCLQGGRKYNLLAKSCSTYFNLPIIASEHTQLSETPYFTRFLVESQILPEADFAGENKTYLKRILRQ |
| Transmembrane helix | 401-423 | SRLAMVASVVFLAGGAYLLGTTL |
| Outside | 424-1131 | DSNLRVIYQLLNIETGDQAADHVRLLDDKLAQAITQIEPVYDAWVEGSEALDEEIVSLNVSRLEPATKMAYQTLLQSIQKELIPVIEQTYRVQLTKYQDKPIQALPVLKGYLMLKEPSKRDLPFMTTQTQSTLSKVIGDSEQVASAMKYLNAYFRTDFAPVNINMDIVRATRRNLLAQSNVDLVYAQLINQANSIDLGTLNIERAVGFDFNNVFNDQIDQELLDISKVYTATGFSTFYRPRVDLMSKDVITNNWVLGLSKNVTPSKEEHEAFKDQIRKKYTDDYISYWRNALSELKVKKYNSIGELTNAIDLVSGPSSPLTTVLKQVYSNTHFSPTGEKELLVNKLPTAATEAIDKLADSAEEFVQPDYLLMQRVEQAFFQLNRLQINETPNSPTPWDEIVTALSRLRTYMKDIADSPDPQMASLLAARSRMQSSEADPIIRLKQIAQKSPEPVRSWLLGMVQQSWSVMIAESAKGVQTQWYSEVYTKYRDLALNKYPFDLNAEEEIALEDFELLFSTGGIIDTFVQKNLASFYDTNLWTPKRVDGETMPLTPELLVQLKNYNVIRDTLINKSTNRVSIPFTTKILDLDSSAIRATVKVADSQMSYYHGPSRIRELEWPPKSGDFNVSITIQDVTDEGKQYVLSENGQWAIYRLLGQSTLTNQHDGSFVSDITVSGRDLKLRVKPLSQRNPFTLAELYNFSLPETIDL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9707 | - | - |
Protein sequence: 1132 a.a.
Nucleotide sequence: 3396 bp