SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015917
Component protein type	TssG
T6SS ID (Type)	T6SS01281 (Type i1)
Strain	Vibrio coralliilyticus OCN008
Replicon	chromosome II
Sequence	Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference	[1] Guillemette R, Ushijima B, Jalan M, et al. Insight into the resilience and susceptibility of marine bacteria to T6SS attack by Vibrio cholerae and Vibrio coralliilyticus. PLoS One. 2020 Jan 28;15(1):e0227864. doi: 10.1371/journal.pone.0227864. eCollection 2020. PMID: 31990915

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	G3U99_RS23865
Coordinate (Strand)	1645189..1646187 (+)
NCBI ID	WP_165579908.1
RefSeq	NZ_CP048694
Uniprot ID	UPI0013F478F0
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	4e-83	9..317

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-332	MINQIEQETHEFGFFQAVSLLEKHYQSQTEYSYNGIGQNKYIWQEHIRFSVSPSLAFPKSDIDFVSHYEMDGNPYSRVEVTFLGLHGSSSPLPSSYTEKLAGRDDEDNPVKQFFDFFHNRHISLVYRVWKKYRYHIQYQSEAKDPFSGRMLHLLGLSSVMQEAEVSELDRAKLLSYVSQLSTRTRSPKLISGIVAHYFSLQNVIVDEWIYRRVAIHQSQRNKLNHVNCVLGQDLHLGKTLPDLVGKFHLRIEDIDFSTYQTFLPRRANYKTLIGLMQFILRDPLAWDLIMKVKLDTIPKNELGQGEGNLLGQTMWLGDPGTKDASIKQIGQL

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9917	-	-

Protein sequence: 333 a.a.

						>T6CP015917 NZ_CP048694:1645189-1646187 [Vibrio coralliilyticus OCN008] [TssG]
MINQIEQETHEFGFFQAVSLLEKHYQSQTEYSYNGIGQNKYIWQEHIRFSVSPSLAFPKSDIDFVSHYEMDGNPYSRVEV
TFLGLHGSSSPLPSSYTEKLAGRDDEDNPVKQFFDFFHNRHISLVYRVWKKYRYHIQYQSEAKDPFSGRMLHLLGLSSVM
QEAEVSELDRAKLLSYVSQLSTRTRSPKLISGIVAHYFSLQNVIVDEWIYRRVAIHQSQRNKLNHVNCVLGQDLHLGKTL
PDLVGKFHLRIEDIDFSTYQTFLPRRANYKTLIGLMQFILRDPLAWDLIMKVKLDTIPKNELGQGEGNLLGQTMWLGDPG
TKDASIKQIGQL*					

Nucleotide sequence: 999 bp

						>T6CP015917 NZ_CP048694:1645189-1646187 [Vibrio coralliilyticus OCN008] [TssG]
ATGATTAATCAGATTGAACAAGAAACCCATGAGTTTGGCTTCTTTCAAGCTGTCTCATTGCTGGAAAAACATTATCAATC
ACAGACAGAATACAGTTATAACGGTATTGGTCAGAACAAGTATATCTGGCAGGAACACATTCGATTCAGTGTTTCTCCAA
GTTTAGCGTTTCCGAAAAGCGACATAGACTTTGTTTCTCATTATGAAATGGACGGTAACCCTTATTCGCGCGTTGAAGTT
ACCTTTTTAGGTCTTCATGGCTCGAGTTCACCGTTACCATCCTCATACACTGAAAAGCTTGCGGGCCGCGACGACGAAGA
TAACCCAGTAAAGCAGTTCTTTGATTTCTTTCATAATCGACATATCTCATTGGTTTATCGAGTATGGAAAAAATACCGCT
ATCATATTCAATATCAGAGTGAAGCTAAGGACCCATTTTCAGGTCGTATGCTGCATCTTCTAGGCTTATCGTCGGTGATG
CAGGAAGCAGAAGTTAGTGAGTTAGACAGAGCAAAGCTACTCTCGTACGTTAGCCAACTCTCGACTCGTACACGCTCTCC
TAAATTGATATCGGGTATTGTGGCTCATTACTTCAGCTTGCAGAATGTTATTGTCGATGAGTGGATTTACCGACGTGTTG
CGATCCATCAATCTCAACGAAATAAGCTGAATCATGTTAATTGCGTGCTTGGTCAAGATCTGCATTTAGGTAAAACCTTG
CCAGATTTAGTGGGCAAGTTTCATCTACGTATTGAAGATATTGATTTCTCTACCTATCAAACTTTCCTTCCACGCCGAGC
AAACTACAAGACATTGATCGGGTTAATGCAGTTTATATTGCGCGATCCGTTGGCATGGGACCTCATTATGAAAGTTAAGC
TTGATACTATTCCTAAAAATGAATTAGGGCAGGGGGAAGGCAATTTGTTAGGACAGACGATGTGGTTAGGTGACCCAGGT
ACAAAAGATGCGTCAATCAAACAAATAGGCCAACTCTAA					