Detailed information of component protein


Summary

Component ID T6CP015916
Component protein type TssF
T6SS ID (Type) T6SS01281 experimental (Type i1)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome II
Sequence Protein sequence (583 a.a.); Nucleotide sequence (1749 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS23860
Coordinate (Strand) 1643444..1645192 (+)
NCBI ID WP_006961141.1
RefSeq NZ_CP048694
Uniprot ID A0A086WMI4_9VIBR, A0A0A0SW47_9VIBR, A0A6B8NI63_9VIBR, A0A649YYR9_9VIBR
KEGG ID vcy:IX92_19605
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.8e-162 5..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-582 VSSSKYFQDELSYLREAGSEFAKYHPKLTNFLGEGVYDPDVERLLEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMRSVPSMCVSELSPHVGSVTEKTVVKRGAEMASEQVEGTQCLFRTCYDVALYPVSITNVEQSNSRTSSNVDVTIAAEYGQELSRLKMDSLRFYLHGEVHVTRTLYLWLFRYLDYIELDVGGGYKHKLPASSIKPVGFGDDEAILPYGTNSFAGYRLLQEYFSLPEKFMFFDVTGLEWLSGVPQRSTVKMSFVFKRALPSEVVLKDKHLRLHCTPAVNLFSKDGDPIRLEHRRSEYKVRPQSSSQDHYEVYSIENVETWSKNERSRKKLIEFESFEHQINQRDKREFYKTKVSERVSGRGLERYISFHTHTSDIAELGSETVLMKLTCSNGDLAERLSVGDVTYTSHNSPTYATFTNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDFHSRVDRQAHRASIHRLDGIKKTEMKPADRVFRGTAIRGTQFTLTVDSTYFVNEGDMFLLVSVLNEFIRLYSSLNSFTELEVFDEKTGENYHWPSLAGQQTVL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9947 - -


  Protein sequence: 583 a.a.    

>T6CP015916 NZ_CP048694:1643444-1645192 [Vibrio coralliilyticus OCN008] [TssF]
VSSSKYFQDELSYLREAGSEFAKYHPKLTNFLGEGVYDPDVERLLEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMR
SVPSMCVSELSPHVGSVTEKTVVKRGAEMASEQVEGTQCLFRTCYDVALYPVSITNVEQSNSRTSSNVDVTIAAEYGQEL
SRLKMDSLRFYLHGEVHVTRTLYLWLFRYLDYIELDVGGGYKHKLPASSIKPVGFGDDEAILPYGTNSFAGYRLLQEYFS
LPEKFMFFDVTGLEWLSGVPQRSTVKMSFVFKRALPSEVVLKDKHLRLHCTPAVNLFSKDGDPIRLEHRRSEYKVRPQSS
SQDHYEVYSIENVETWSKNERSRKKLIEFESFEHQINQRDKREFYKTKVSERVSGRGLERYISFHTHTSDIAELGSETVL
MKLTCSNGDLAERLSVGDVTYTSHNSPTYATFTNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDF
HSRVDRQAHRASIHRLDGIKKTEMKPADRVFRGTAIRGTQFTLTVDSTYFVNEGDMFLLVSVLNEFIRLYSSLNSFTELE
VFDEKTGENYHWPSLAGQQTVL*

  Nucleotide sequence: 1749 bp    

>T6CP015916 NZ_CP048694:1643444-1645192 [Vibrio coralliilyticus OCN008] [TssF]
GTGAGCAGCAGTAAATATTTTCAGGATGAACTTTCTTATCTTCGCGAAGCGGGAAGCGAGTTCGCTAAATACCATCCTAA
ACTGACGAATTTCCTGGGCGAAGGTGTCTATGACCCAGATGTTGAACGTCTATTAGAAGGTTTCGCTTTCTTAACAGGAA
GAATTCGGGAAAAGATTGACGACGAACTGCCAGAGTTAACGCAGTCATTGATGACTCTGCTTTGGCCTCACTACATGCGC
TCTGTTCCGTCTATGTGTGTGTCAGAGCTATCACCGCATGTGGGTAGTGTGACTGAGAAAACAGTAGTCAAACGTGGTGC
TGAAATGGCAAGTGAGCAGGTTGAGGGGACGCAGTGTTTGTTCCGTACCTGTTACGATGTGGCACTCTATCCTGTCAGTA
TCACGAATGTGGAACAGTCCAACAGTCGAACGAGTTCAAACGTTGACGTCACAATAGCCGCAGAATACGGTCAGGAACTT
TCTAGGCTAAAAATGGACTCGTTGCGTTTTTATCTTCACGGTGAAGTTCATGTAACGCGAACCTTATATCTTTGGTTGTT
CCGTTACCTAGATTACATCGAACTGGATGTTGGCGGTGGATACAAACACAAATTGCCTGCAAGCAGTATTAAGCCTGTCG
GCTTTGGCGACGATGAAGCGATTTTGCCATACGGAACTAACTCTTTTGCCGGGTATCGCTTGCTTCAGGAATACTTTTCT
CTACCAGAGAAGTTTATGTTCTTCGACGTGACTGGATTAGAGTGGTTAAGTGGCGTTCCACAACGTTCAACCGTTAAGAT
GTCTTTTGTCTTTAAACGCGCATTGCCTTCGGAAGTGGTATTAAAAGACAAGCACTTACGATTACACTGTACGCCAGCAG
TTAACCTATTTAGCAAAGACGGTGACCCGATTCGACTGGAGCATCGCCGAAGCGAATACAAAGTCAGGCCTCAGAGTAGT
AGTCAAGATCACTACGAAGTGTACTCGATTGAAAATGTAGAGACCTGGAGTAAGAACGAGCGTAGCCGTAAGAAGTTGAT
TGAATTTGAATCGTTCGAGCATCAGATTAATCAGCGCGACAAGCGTGAGTTTTATAAAACCAAGGTATCTGAGCGAGTCA
GTGGACGTGGCTTAGAACGTTATATCTCTTTCCATACGCACACTAGTGATATTGCCGAGTTAGGCTCAGAAACGGTGCTT
ATGAAGCTCACGTGTAGTAATGGCGACCTAGCAGAACGTTTGTCGGTAGGCGATGTGACATACACATCACACAATTCCCC
TACGTACGCAACATTCACCAATATCACTAAGCCGACTCAGTCGGTGAGCCCACAGGTAAATGGTGAATTGCAGTGGCAAT
TGATCGCAAATATGTCGTTGAACTATCTGTCTCTGGCCAACATAGATGTACTGAAAGTGCTTTTATCGACCTATGACTTT
CATTCCCGCGTCGATCGTCAGGCGCATCGAGCGTCGATCCACCGCTTGGATGGGATAAAGAAAACGGAGATGAAGCCAGC
AGACAGGGTATTTAGAGGCACAGCCATTCGAGGTACCCAATTTACTCTAACGGTAGACTCGACGTACTTTGTCAATGAAG
GCGATATGTTCCTGTTGGTGAGTGTACTAAATGAGTTCATTCGATTGTATTCCAGCCTGAACTCATTTACAGAGCTAGAA
GTGTTTGATGAGAAAACCGGCGAAAACTATCACTGGCCAAGTCTAGCGGGGCAGCAGACCGTTCTATGA