Detailed information of component protein
Summary
| Component ID | T6CP015915 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01281  (Type i1) |
| Strain | Vibrio coralliilyticus OCN008 |
| Replicon | chromosome II |
| Sequence | Protein sequence (137 a.a.); Nucleotide sequence (411 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | G3U99_RS23855 |
| Coordinate (Strand) | 1643015..1643425 (+) |
| NCBI ID | WP_019277706.1 |
| RefSeq | NZ_CP048694 |
| Uniprot ID | A0A086WMI5_9VIBR, A0A097AXV0_9VIBR, A0A7Y3ZNU4_9VIBR, A0A6B8NGX5_9VIBR, A0A649YYN5_9VIBR |
| KEGG ID | vcy:IX92_19600, vct:JV59_19700 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 3.5e-17 | 29..115 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-136 | MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHIHLADLLNTHAGNAMIDNDYGLPDFNDVLASQSNLVRHIQQNIRTTIHKFEPRLGNIEVTYRQDFHNPLQLSFGITGEVSHNGGQVPMSINVFMGVDGKFNV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9962 | - | - |
Protein sequence: 137 a.a.
>T6CP015915 NZ_CP048694:1643015-1643425 [Vibrio coralliilyticus OCN008] [TssE]
MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHIHLADLLNTHAGNAMIDNDYGLPDFNDVLASQSNLVRHIQQNIRTT
IHKFEPRLGNIEVTYRQDFHNPLQLSFGITGEVSHNGGQVPMSINVFMGVDGKFNV*
MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHIHLADLLNTHAGNAMIDNDYGLPDFNDVLASQSNLVRHIQQNIRTT
IHKFEPRLGNIEVTYRQDFHNPLQLSFGITGEVSHNGGQVPMSINVFMGVDGKFNV*
Nucleotide sequence: 411 bp
>T6CP015915 NZ_CP048694:1643015-1643425 [Vibrio coralliilyticus OCN008] [TssE]
ATGGAAAAAGGTTATCGCTTACTCGAACGCATTGAATTGGGGGAGCCCAAGAATTGCTACGAAAAAGTTGTTTCACACAA
ACATCTTATTGAATCTATACATATTCATCTCGCAGATTTGCTTAACACACATGCCGGGAATGCAATGATAGACAATGATT
ATGGTCTTCCTGATTTCAATGATGTCCTTGCTAGCCAATCAAACTTAGTACGTCATATTCAGCAGAATATCCGCACGACT
ATTCATAAGTTTGAACCTAGACTGGGCAATATCGAAGTGACATATCGTCAGGACTTTCATAATCCCTTACAGCTGAGTTT
CGGCATCACTGGTGAGGTTTCTCACAATGGTGGTCAGGTTCCAATGTCTATCAATGTGTTCATGGGCGTTGACGGTAAGT
TCAACGTTTAA
ATGGAAAAAGGTTATCGCTTACTCGAACGCATTGAATTGGGGGAGCCCAAGAATTGCTACGAAAAAGTTGTTTCACACAA
ACATCTTATTGAATCTATACATATTCATCTCGCAGATTTGCTTAACACACATGCCGGGAATGCAATGATAGACAATGATT
ATGGTCTTCCTGATTTCAATGATGTCCTTGCTAGCCAATCAAACTTAGTACGTCATATTCAGCAGAATATCCGCACGACT
ATTCATAAGTTTGAACCTAGACTGGGCAATATCGAAGTGACATATCGTCAGGACTTTCATAATCCCTTACAGCTGAGTTT
CGGCATCACTGGTGAGGTTTCTCACAATGGTGGTCAGGTTCCAATGTCTATCAATGTGTTCATGGGCGTTGACGGTAAGT
TCAACGTTTAA