Detailed information of component protein


Summary

Component ID T6CP015914
Component protein type TssC
T6SS ID (Type) T6SS01281 experimental (Type i1)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome II
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS23850
Coordinate (Strand) 1641476..1642951 (+)
NCBI ID WP_006961143.1
RefSeq NZ_CP048694
Uniprot ID A0A097AXU1_9VIBR, A0A6B8NFD5_9VIBR, A0A649YYM8_9VIBR
KEGG ID vct:JV59_19705
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.7e-123 68..365
VipB_2 PF18945.2 3.4e-45 379..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-491 MTAEAQAPEQEAALAESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSNNSAEKVDQSLVDLMIGEIDQKLSKQVDAILHNEEVQAIESTWRGLKYLVDHTDFRENILIELISAKKDEMLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVICDYQLTSSSPDIKLMEYMANVGAMSHAPFITSASSKFFGLDSYEELPNMKDLKSVFEGPQYTKWRGLREHEDSRYLGLCTSRFMLRNPYSVEDNPIKAFDYDELVTDDHNNFLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGAVFDLPVYNYESMGQIETKIPTEILVSDRREFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVYANTPEGKNAEMNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSDVEGDPGWYKVSMSVRPHFKYMGASFDLSLVGKLDQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9855 - -


  Protein sequence: 492 a.a.    

>T6CP015914 NZ_CP048694:1641476-1642951 [Vibrio coralliilyticus OCN008] [TssC]
MTAEAQAPEQEAALAESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSNNSAEKVDQSLVDLMIGEIDQKLSKQV
DAILHNEEVQAIESTWRGLKYLVDHTDFRENILIELISAKKDEMLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVI
CDYQLTSSSPDIKLMEYMANVGAMSHAPFITSASSKFFGLDSYEELPNMKDLKSVFEGPQYTKWRGLREHEDSRYLGLCT
SRFMLRNPYSVEDNPIKAFDYDELVTDDHNNFLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGAVFDLPVYNYESMGQ
IETKIPTEILVSDRREFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVYANTPEGKNAEMNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSDVEGDPGWYKVSMSVRPHFKYMGAS
FDLSLVGKLDQ*

  Nucleotide sequence: 1476 bp    

>T6CP015914 NZ_CP048694:1641476-1642951 [Vibrio coralliilyticus OCN008] [TssC]
ATGACAGCAGAAGCACAAGCTCCAGAACAAGAAGCGGCGTTGGCTGAATCTGGTTCTCTTCTGGATAGCATTCTTAACGA
AACACGCCTGAAGCCAAGTGACGAAGGTTTTGACGTTGCAAAGCGCGGTGTTGAAGCGTTCATCGGTGAACTTTTAAGTA
ACAACTCTGCCGAGAAAGTTGACCAGTCTCTGGTTGATTTGATGATTGGTGAGATTGACCAGAAGCTATCAAAGCAGGTT
GATGCGATTCTTCACAACGAAGAAGTACAGGCTATCGAATCTACGTGGCGTGGTCTTAAGTATCTGGTTGATCACACGGA
CTTCCGTGAAAACATCCTTATCGAACTTATTTCAGCGAAGAAAGACGAGATGCTGGATGACTTCGAAGATGCTCCAGAAG
TTGTGAAGTCAGGTCTATACAAGCAGATCTATACGCGTGAATACGGTCAGTTTGGTGGTAAGCCAGTTGGCGCAGTAATC
TGTGATTACCAGCTAACGTCTTCAAGCCCAGATATCAAACTAATGGAATACATGGCGAACGTTGGTGCGATGTCACATGC
TCCGTTCATCACATCGGCATCTTCTAAGTTCTTTGGTTTGGATAGCTACGAAGAGCTACCAAACATGAAAGACCTGAAGT
CGGTATTCGAAGGCCCTCAGTACACGAAATGGCGTGGTCTACGTGAACATGAAGACTCACGTTACCTAGGTCTTTGTACT
TCTCGTTTCATGCTACGTAACCCTTACTCAGTGGAAGACAACCCAATCAAGGCGTTTGACTACGACGAGTTGGTAACAGA
TGACCACAACAACTTCTTGTGGGGTAACTCTGCTTACGCTATGGCATCTAAGATCAGTGAATCGTTCGCTAAGTACCGTT
GGTGTCCAAACATCATTGGTCCACAAAGTGGCGGTGCGGTATTCGATCTGCCAGTTTATAACTACGAGTCAATGGGCCAG
ATCGAAACGAAGATCCCTACAGAGATCTTGGTTTCTGACCGTCGTGAGTTTGAACTTGCAGAAGAAGGCTTTATTGCTCT
GACGATGCGTAAAGGTTCGGACAATGCTGCGTTCTTCTCAGCAAACTCTATCCAGAAACCTAAGGTTTATGCGAATACGC
CAGAAGGCAAAAACGCGGAAATGAACTACAAGTTAGGTACACAGCTTCCATACATGTTCATCATTAACCGTCTAGCGCAC
TACATCAAAGTACTACAGCGTGAGCAGATTGGTTCTTGGAAGGAGCGCTCTGACCTTGAAATCGAACTGAACAAGTGGAT
CCGTCAGTACGTTTCTGATCAGGAAAACCCGCCAGCAGAAGTACGCGGTCGTCGTCCTCTTCGCGCAGCGAAGGTTGAAG
TATCTGACGTTGAAGGCGATCCAGGCTGGTACAAGGTATCAATGTCTGTACGTCCTCACTTCAAGTACATGGGTGCGAGC
TTTGACCTGTCTCTAGTTGGTAAACTGGATCAGTAA