Detailed information of component protein


Summary

Component ID T6CP015913
Component protein type TssB
T6SS ID (Type) T6SS01281 experimental (Type i1)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome II
Sequence Protein sequence (170 a.a.); Nucleotide sequence (510 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) G3U99_RS23845
Coordinate (Strand) 1640957..1641466 (+)
NCBI ID WP_006961144.1
RefSeq NZ_CP048694
Uniprot ID A0A086WMI7_9VIBR, A0A097AXY0_9VIBR, A0A6B8NI90_9VIBR, A0A649YYQ8_9VIBR
KEGG ID vct:JV59_19710
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.9e-58 6..157

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-169 MSRDGSVAPKERINIRYVPATGDAQEDVELPLNMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGYAPNLKVNVENRLTDEEGAQLGVDLTFTNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARKKLLEELSIGENQDAEKAE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9860 - -



  Protein sequence: 170 a.a.    

>T6CP015913 NZ_CP048694:1640957-1641466 [Vibrio coralliilyticus OCN008] [TssB]
MSRDGSVAPKERINIRYVPATGDAQEDVELPLNMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGYAPNLKVNVENR
LTDEEGAQLGVDLTFTNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARKKLLEELSIG
ENQDAEKAE*

  Nucleotide sequence: 510 bp    

>T6CP015913 NZ_CP048694:1640957-1641466 [Vibrio coralliilyticus OCN008] [TssB]
ATGTCACGCGATGGCTCGGTAGCTCCTAAAGAGCGAATTAATATCCGTTACGTTCCAGCGACTGGTGATGCGCAAGAAGA
CGTTGAACTGCCGTTGAATATGATGGTTGTTGGTGACTTTACAGCACGTGCTGATGAGACACCAATCGAAGAACGTACGC
CAATCAATATTGACAAAGACAATTTTAACGAAGTTTTGGAAGGCTATGCTCCAAACCTAAAAGTTAATGTTGAAAACCGT
CTGACTGATGAAGAAGGTGCACAGCTTGGCGTTGATCTAACGTTTACGAACATGAAGGACTTCTCACCTGAGGCGATTGC
TAAAAGTGTTCCGGAACTAAACAGCCTGCTAGAGCTTCGTGAAGCATTGGTTGCGCTAAAAGGTCCACTAGGCAACGTAC
CTGCATTCCGTAAGAAGATCGCTGCCGTTCTTCAGGATGAAGAAGCTCGTAAGAAATTACTAGAAGAACTCAGCATTGGT
GAAAACCAAGATGCTGAAAAGGCTGAATAA