Detailed information of component protein
Summary
| Component ID | T6CP015910 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01281  (Type i1) |
| Strain | Vibrio coralliilyticus OCN008 |
| Replicon | chromosome II |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | G3U99_RS23805 |
| Coordinate (Strand) | 1630748..1631266 (+) |
| NCBI ID | WP_006961152.1 |
| RefSeq | NZ_CP048694 |
| Uniprot ID | A0A086WMJ5_9VIBR, A0A0F4NVQ2_9VIBR, A0A097AXW7_9VIBR, A0A7Y3ZPZ1_9VIBR, A0A6B8NGY3_9VIBR, A0A649YYP5_9VIBR |
| KEGG ID | vct:JV59_19750, vcy:IX92_19550 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.5e-30 | 6..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPAYMSITGETQGDITKDAYSADSVGNSWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVIVTKAQDCCSPLLFNALVSGEKLPECNIKFYRTSVQGKQEHYYTIKLIDALLVDMQTRMAHCQDAATSDRVTEEVLSFTYRAIEVTHEVMGKGGNDDWRAPREA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9545 | - | - |
Protein sequence: 173 a.a.
>T6CP015910 NZ_CP048694:1630748-1631266 [Vibrio coralliilyticus OCN008] [TssD]
MPTPAYMSITGETQGDITKDAYSADSVGNSWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVIVTKAQDCCSPL
LFNALVSGEKLPECNIKFYRTSVQGKQEHYYTIKLIDALLVDMQTRMAHCQDAATSDRVTEEVLSFTYRAIEVTHEVMGK
GGNDDWRAPREA*
MPTPAYMSITGETQGDITKDAYSADSVGNSWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVIVTKAQDCCSPL
LFNALVSGEKLPECNIKFYRTSVQGKQEHYYTIKLIDALLVDMQTRMAHCQDAATSDRVTEEVLSFTYRAIEVTHEVMGK
GGNDDWRAPREA*
Nucleotide sequence: 519 bp
>T6CP015910 NZ_CP048694:1630748-1631266 [Vibrio coralliilyticus OCN008] [TssD]
ATGCCAACTCCTGCGTATATGTCTATCACGGGCGAAACTCAAGGCGATATCACAAAAGATGCTTACTCAGCTGACTCAGT
TGGTAACTCATGGCAAGAAGCACACGTTGATGAGTTTCTAGTTCAAGAACTTGATCACGTACTAACTATTCCACGTGATC
CACAAAGTGGTCAGCCAACAGGTCAACGTGTTCACAAGCCTGTAATCGTAACTAAGGCACAAGACTGCTGTTCACCACTT
CTATTCAACGCACTAGTTTCTGGTGAAAAACTACCTGAGTGTAACATCAAGTTCTACCGTACTTCAGTACAAGGTAAGCA
AGAGCACTACTACACAATCAAACTAATTGATGCTCTTCTAGTTGATATGCAAACTCGTATGGCTCACTGTCAAGATGCTG
CTACTTCTGACCGTGTAACTGAAGAAGTATTGAGCTTCACTTACCGTGCAATCGAAGTTACTCACGAAGTAATGGGTAAA
GGCGGTAACGACGACTGGCGTGCTCCACGCGAAGCGTAA
ATGCCAACTCCTGCGTATATGTCTATCACGGGCGAAACTCAAGGCGATATCACAAAAGATGCTTACTCAGCTGACTCAGT
TGGTAACTCATGGCAAGAAGCACACGTTGATGAGTTTCTAGTTCAAGAACTTGATCACGTACTAACTATTCCACGTGATC
CACAAAGTGGTCAGCCAACAGGTCAACGTGTTCACAAGCCTGTAATCGTAACTAAGGCACAAGACTGCTGTTCACCACTT
CTATTCAACGCACTAGTTTCTGGTGAAAAACTACCTGAGTGTAACATCAAGTTCTACCGTACTTCAGTACAAGGTAAGCA
AGAGCACTACTACACAATCAAACTAATTGATGCTCTTCTAGTTGATATGCAAACTCGTATGGCTCACTGTCAAGATGCTG
CTACTTCTGACCGTGTAACTGAAGAAGTATTGAGCTTCACTTACCGTGCAATCGAAGTTACTCACGAAGTAATGGGTAAA
GGCGGTAACGACGACTGGCGTGCTCCACGCGAAGCGTAA