Detailed information of component protein


Summary

Component ID T6CP015909
Component protein type TssH
T6SS ID (Type) T6SS01281 experimental (Type i1)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome II
Sequence Protein sequence (891 a.a.); Nucleotide sequence (2673 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS23800
Coordinate (Strand) 1627613..1630285 (-)
NCBI ID WP_165579905.1
RefSeq NZ_CP048694
Uniprot ID UPI0013F3D198
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.5e-43 624..788
AAA_lid_9 PF17871.3 5.5e-31 357..452
ClpB_D2-small PF10431.11 1.9e-13 795..870
AAA PF00004.31 7.3e-10 220..348
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-890 MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHFLLSLLERPNSDFDVLLAHFDCSENILRQSIRSTLDTSPTGNGGKPVFSALLIEWLQESWLVSSLDLSQTQIRSGALLLTLVSNPLRYGQHGYAAILESVNPDSLKRNFGELTSQSLEAQVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQGEVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNISLNAVPASVETLQQELAAQTRELEALERDQLQQTGDKHSLASIPDIKVAMEKTQAELEVQEAQWKNEKEQIEEMIALRTRLHELVSGEEIEVAEAEEEGEEAETSPYAEMDEESVRIAIAACQEQLDAIRGSNPLVHFEVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKDSLTSNIKGQEYAIDALAEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQLFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDKGTLNDGEGRSIDFKNTLIIMTSNLATHEIESLVQQSKDINAGVIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAMTDIIHHKLGKVSERLQSHHKLSLNYDDTLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDESHSQITVSVDEQGTLSYAFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9927 - -


  Protein sequence: 891 a.a.    

>T6CP015909 NZ_CP048694:c1630285-1627613 [Vibrio coralliilyticus OCN008] [TssH]
MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHFLLSLLERPNSDFDVLLAHFDCSENILRQSIRSTLDTSPT
GNGGKPVFSALLIEWLQESWLVSSLDLSQTQIRSGALLLTLVSNPLRYGQHGYAAILESVNPDSLKRNFGELTSQSLEAQ
VATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQ
GEVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALAR
GEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQ
LPDKAIDVLDTACARVNISLNAVPASVETLQQELAAQTRELEALERDQLQQTGDKHSLASIPDIKVAMEKTQAELEVQEA
QWKNEKEQIEEMIALRTRLHELVSGEEIEVAEAEEEGEEAETSPYAEMDEESVRIAIAACQEQLDAIRGSNPLVHFEVGP
DEVSHVISDWTGIPMGKMLQDEAETTLKLKDSLTSNIKGQEYAIDALAEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTE
TARAIADQLFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQV
FDKGTLNDGEGRSIDFKNTLIIMTSNLATHEIESLVQQSKDINAGVIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAM
TDIIHHKLGKVSERLQSHHKLSLNYDDTLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDESHSQITVSVD
EQGTLSYAFS*

  Nucleotide sequence: 2673 bp    

>T6CP015909 NZ_CP048694:c1630285-1627613 [Vibrio coralliilyticus OCN008] [TssH]
ATGATAAATATTAATCTATCTTCATTAATTCAACGTCTGCACCCTATCGCAAAAGTCGCGCTAGAAGACGCCGCAGCTTT
GGCTGTATCAGAAAAGGCCAACGAAGTTCAAATTGAACACTTCCTTTTAAGTCTACTAGAAAGACCAAACAGCGATTTTG
ATGTTCTACTTGCACACTTTGACTGTTCGGAAAACATTTTACGCCAATCTATTCGCTCTACTTTAGATACAAGCCCAACA
GGTAACGGTGGCAAACCTGTATTTTCTGCTTTATTGATCGAATGGTTACAAGAAAGCTGGCTAGTATCTTCACTAGACTT
ATCTCAAACACAGATCCGTTCAGGCGCGCTGCTACTTACTTTAGTGAGTAACCCTCTACGCTATGGTCAGCACGGATACG
CCGCAATTCTTGAAAGCGTCAATCCAGACAGCCTAAAACGCAATTTTGGTGAACTTACCAGCCAATCTCTTGAAGCGCAG
GTTGCAACCTCTGAAAAGACACAAGCTCGTGAAGACGGTTCTGCGCTGAGTAAATTCACAACAGACTTTACTGGCAAAGC
ACGTAAAGGTGAAATCGATCCTGTATTCTGTCGTGATCAGGAAATTCGCCAAATCGTCGATATCCTTGCTCGTCGTCGTA
AAAACAACCCTATCGCAGTCGGCGAACCAGGTGTTGGTAAAACTGCTGTCGTTGAAGGACTAGCACTTAAAATCGTCCAA
GGTGAAGTGCCTGATAACCTGAAGGGTGTTGAACTTTATGGCTTAGATATGGGCCTACTTCAGGCTGGTGCGAGCGTAAA
AGGCGAATTCGAGAAACGCCTGAATGCCGTTCTAGACGAAGTGAAAAATTCGCCAACACCAATCATTCTCTTCATTGATG
AAGCACATACGCTTGTCGGTGGTGGTAACCAAGCAGGCGGCAGTGACGCAGCAAACCTACTAAAACCAGCTCTTGCCCGC
GGTGAAGTAAAAACAATCGCAGCGACAACTTGGTCTGAATATAAGAAATACTTCGAGAAAGATCCTGCCCTAGCTCGACG
CTTCCAACTGGTTAAACTGGATGAGCCATCACCTGAGCAAGCAGCTCTAATTATTCGTGGCCTACGCCCTGCTTATGAAA
AATCTCATAACGTTTACGTTCGTGATGATGCCATCACTGCCGCAGCCGCACTTTCTGCTCGTTACATTTCAGGTCGCCAA
CTACCGGACAAAGCCATCGATGTTCTGGATACAGCTTGTGCCCGCGTAAACATCAGCCTAAATGCGGTACCAGCTTCAGT
TGAAACATTGCAGCAAGAGCTTGCAGCTCAAACTCGCGAACTTGAAGCCCTTGAGCGTGACCAGCTTCAGCAAACTGGCG
ACAAGCACAGCCTAGCGTCTATCCCAGATATAAAAGTGGCGATGGAGAAAACACAAGCTGAGCTAGAAGTCCAAGAAGCA
CAATGGAAAAACGAGAAAGAGCAAATCGAAGAGATGATCGCGTTGCGTACTCGCCTTCATGAGCTTGTTTCTGGGGAAGA
AATTGAAGTTGCAGAAGCTGAGGAAGAAGGCGAAGAAGCGGAAACCTCACCTTATGCAGAAATGGACGAAGAATCGGTAC
GCATCGCCATTGCAGCTTGTCAGGAACAACTTGATGCCATTCGCGGCAGCAACCCACTTGTACATTTCGAAGTTGGCCCA
GATGAAGTAAGTCATGTAATTTCTGACTGGACGGGTATCCCTATGGGTAAAATGCTTCAAGACGAAGCAGAAACAACTCT
AAAGCTAAAAGACAGCTTAACCAGCAACATCAAAGGCCAAGAGTATGCGATCGATGCTCTGGCTGAAGGCATTCAAACAG
CGAAAGCTGGTCTAGGCAACCCTGACGCTCCAACTGGTGTGTTCTTGCTTGTCGGCCCAAGTGGTGTCGGTAAAACAGAA
ACGGCACGGGCTATTGCGGATCAACTGTTTGGCGGTGAGCGCTTTATGACCACCATCAACATGTCTGAATTCCAAGAGAA
ACACACAGTGTCACGTCTGATTGGTTCTCCTCCAGGCTATGTAGGTTACGGCGAAGGCGGCATGCTGACTGAAGCAGTAC
GTCAACGTCCATACTCTGTTGTTCTTTTGGATGAAGTTGAAAAAGCAGATCCAGAAGTGCTTAACCTGTTCTATCAAGTA
TTTGATAAAGGCACACTGAACGACGGTGAAGGCCGTTCTATCGACTTCAAGAACACCTTAATCATCATGACAAGTAACCT
TGCGACTCATGAGATTGAGTCACTGGTACAGCAGTCGAAAGACATCAATGCTGGCGTGATTGCGGAAGCTATTCGTCCGA
CGCTGAACCAACACTTCAAACCAGCACTACTCGCTCGTATGTCTGTGCTACCGTTTGTTCCTCTATCTGACGAAGCAATG
ACAGACATCATCCACCACAAATTGGGTAAAGTGTCTGAGCGTCTTCAAAGCCATCACAAACTGTCGTTGAACTACGACGA
TACCTTAGTCGAATTCGTACTTGGCAACTGTCGTTTAGCGGAAACAGGGGCTCGTAACATCGATGCGGTAATCAACCGTC
AGTTACTCCCTCAGCTATCGACACAACTATTAGTGCACGACAAGGATGAGTCGCACAGTCAGATCACTGTATCTGTCGAT
GAGCAAGGAACGCTATCTTATGCGTTCAGCTAA