Detailed information of component protein


Summary

Component ID T6CP015908
Component protein type TssM
T6SS ID (Type) T6SS01280 experimental (Type i5)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome I
Sequence Protein sequence (1128 a.a.); Nucleotide sequence (3384 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS13210
Coordinate (Strand) 2784128..2787511 (+)
NCBI ID WP_021457565.1
RefSeq NZ_CP048693
Uniprot ID A0A2A2MW72_9VIBR
KEGG ID vcy:IX92_06550
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.7e-56 170..423
IcmF-related PF06761.14 1e-32 493..769
IcmF_C PF06744.14 9.5e-12 1004..1107
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-16 MAESTSSKSTNNRRSS
Transmembrane helix 17-39 ILWTLLFVVITFAVGGVLTWKYA
Outside 40-43 YPTH
Transmembrane helix 44-66 TLVGVLSTLLVAILLGSLCYWLL
Inside 67-413 SRRKNKPQTSNQEKALINKRCKLLAQHFKLMLYVQKRKKRLSSRYDQPTYILLSDDPRKDKSIITQMGYEAYKVDDFGNDIEFPILFWLSEHSILISVSLGEDQNPAYIKTLCQSLNKWRPRQAINGLLLTTDVKELLNSTETLTQKADQIKSEIQGFNRAFGLNLPVYNVITQMGQINDFCQFFSAFDETKRNEVFGATSPIQKHGGIDGDWFNEEYDSLISQLIANMSTALASQLNQDYRNAICAAPYQFGLLKQSLWQFLHRLYRGDQLQDGLNFRGFYFTHSGTNQAQHDVLANVVNQSLGHEQFQQHQQIPVQQTLFAQHLMTHAVLNEHDLVGVNRRKENL
Transmembrane helix 414-436 LLTMQTAYTLFWLGLFASVLLVI
Outside 437-1127 KLDFDYQSQREARADSMLERYKESIAAQPYDIENMSDNIPNLYSLNRIYSLYLEPKPWYTLSIMPSSSIMKDVQAAYFSELQRVLIPSMENTLEKDLFVYVNLEDQAKTLSLLNNYRLLFNPERTNITELKNYFVTTLEEQGEADSVNVAQLRVLLDDVFAQDLVPIKPNFDLESLAKKVINQTGIETLLYEHILNSPTYSKRIDVRQELGTNFNQLLSFSPDYVGYLVPYLFTPSGFNELDLSVDSPVLKDALKAYEGVAGTSPSALEMYRISRDLKQMYQGDYINYWRDFATHIQVKSISNADELKQTLAVLTTASNNPLAQLYTTISKYTSVELIQPETKKEGEQPPEQDIDKKESARQIYIAFSQYHKQVTADDQGNKPIDALLGQFTEAETWLGKFYEAEDPQKVAYQALTAEIKTSNPISLLAQQEASQPSISKQILAQITKQTNDLVMSLAHAYLNSTWKTEVYQPYETTIAAYYPFNKTASLDASTADVAAFFKVNGILDQFYQTKLKSFSTEERSPYLYGLLPNTGLALDPAVWQMIDKARDIRNALFLADPQNMSLQFQLKAKEMSSDVTEFIIRGEKPLFTYQHGPRLWSKQSWNATAIEQDALGFQIKAQASSIANEKFEGNWAWFKLIEPRVASTTSQQTEVAIKYGESQVELSIKTQGQNNPFVPNFFSAFSLPSSI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9853 - -


  Protein sequence: 1128 a.a.    

>T6CP015908 NZ_CP048693:2784128-2787511 [Vibrio coralliilyticus OCN008] [TssM]
MAESTSSKSTNNRRSSILWTLLFVVITFAVGGVLTWKYAYPTHTLVGVLSTLLVAILLGSLCYWLLSRRKNKPQTSNQEK
ALINKRCKLLAQHFKLMLYVQKRKKRLSSRYDQPTYILLSDDPRKDKSIITQMGYEAYKVDDFGNDIEFPILFWLSEHSI
LISVSLGEDQNPAYIKTLCQSLNKWRPRQAINGLLLTTDVKELLNSTETLTQKADQIKSEIQGFNRAFGLNLPVYNVITQ
MGQINDFCQFFSAFDETKRNEVFGATSPIQKHGGIDGDWFNEEYDSLISQLIANMSTALASQLNQDYRNAICAAPYQFGL
LKQSLWQFLHRLYRGDQLQDGLNFRGFYFTHSGTNQAQHDVLANVVNQSLGHEQFQQHQQIPVQQTLFAQHLMTHAVLNE
HDLVGVNRRKENLLLTMQTAYTLFWLGLFASVLLVIKLDFDYQSQREARADSMLERYKESIAAQPYDIENMSDNIPNLYS
LNRIYSLYLEPKPWYTLSIMPSSSIMKDVQAAYFSELQRVLIPSMENTLEKDLFVYVNLEDQAKTLSLLNNYRLLFNPER
TNITELKNYFVTTLEEQGEADSVNVAQLRVLLDDVFAQDLVPIKPNFDLESLAKKVINQTGIETLLYEHILNSPTYSKRI
DVRQELGTNFNQLLSFSPDYVGYLVPYLFTPSGFNELDLSVDSPVLKDALKAYEGVAGTSPSALEMYRISRDLKQMYQGD
YINYWRDFATHIQVKSISNADELKQTLAVLTTASNNPLAQLYTTISKYTSVELIQPETKKEGEQPPEQDIDKKESARQIY
IAFSQYHKQVTADDQGNKPIDALLGQFTEAETWLGKFYEAEDPQKVAYQALTAEIKTSNPISLLAQQEASQPSISKQILA
QITKQTNDLVMSLAHAYLNSTWKTEVYQPYETTIAAYYPFNKTASLDASTADVAAFFKVNGILDQFYQTKLKSFSTEERS
PYLYGLLPNTGLALDPAVWQMIDKARDIRNALFLADPQNMSLQFQLKAKEMSSDVTEFIIRGEKPLFTYQHGPRLWSKQS
WNATAIEQDALGFQIKAQASSIANEKFEGNWAWFKLIEPRVASTTSQQTEVAIKYGESQVELSIKTQGQNNPFVPNFFSA
FSLPSSI*

  Nucleotide sequence: 3384 bp    

>T6CP015908 NZ_CP048693:2784128-2787511 [Vibrio coralliilyticus OCN008] [TssM]
ATGGCAGAATCAACTTCATCTAAATCTACAAACAACAGACGAAGCAGCATACTTTGGACTCTTCTGTTTGTGGTCATTAC
CTTTGCTGTTGGAGGTGTTCTGACCTGGAAGTATGCTTATCCAACACACACTTTAGTTGGTGTACTATCGACACTACTGG
TCGCTATCCTTTTAGGCTCGCTATGTTATTGGTTACTTTCTCGTCGAAAGAACAAGCCACAAACATCTAATCAAGAAAAA
GCGCTAATCAACAAGCGCTGTAAACTGCTTGCGCAACACTTTAAGCTGATGCTTTACGTGCAAAAGAGAAAGAAACGCCT
CAGTAGCCGTTACGATCAACCAACTTATATTCTACTCAGCGACGATCCTCGTAAAGATAAGAGCATCATTACTCAAATGG
GTTATGAAGCTTACAAAGTGGATGATTTTGGCAACGATATCGAGTTCCCTATTTTATTTTGGCTAAGTGAACACTCAATA
CTTATTTCGGTGAGCTTGGGAGAGGACCAAAACCCTGCTTACATCAAAACGCTCTGCCAAAGTTTAAACAAATGGCGTCC
GCGTCAGGCAATAAATGGCTTGTTATTGACGACAGATGTGAAAGAGCTACTCAATTCCACGGAGACCCTAACGCAAAAAG
CAGATCAGATAAAATCTGAGATTCAGGGCTTCAACCGAGCATTTGGCCTTAATCTACCAGTTTACAATGTCATTACTCAG
ATGGGGCAAATTAACGATTTTTGTCAGTTCTTCTCCGCTTTTGATGAAACAAAACGGAACGAGGTATTTGGAGCTACATC
TCCGATTCAAAAGCATGGCGGAATTGATGGGGACTGGTTCAATGAAGAGTATGACAGCCTCATTAGCCAGTTAATAGCTA
ATATGAGTACCGCTCTAGCATCGCAACTAAATCAAGATTACCGCAATGCAATCTGTGCAGCCCCATACCAATTCGGTTTA
CTAAAACAAAGTCTGTGGCAGTTCCTTCATCGCTTATATCGCGGCGATCAGCTACAAGATGGGCTTAACTTCCGAGGCTT
TTATTTCACACATAGTGGCACGAACCAAGCGCAACACGATGTTTTAGCTAACGTCGTAAACCAGTCTCTTGGACACGAGC
AATTTCAGCAGCATCAACAAATCCCAGTGCAGCAAACCTTATTTGCTCAGCACCTGATGACTCACGCTGTACTTAACGAG
CACGATCTTGTTGGAGTCAATCGTCGCAAAGAAAACTTACTGCTGACTATGCAAACAGCCTATACCCTATTCTGGCTAGG
ATTGTTTGCAAGTGTACTACTTGTCATAAAATTGGACTTCGACTATCAAAGCCAACGTGAAGCGCGTGCCGATAGCATGC
TCGAACGCTACAAGGAGTCTATCGCAGCGCAGCCTTATGACATTGAAAACATGTCAGATAACATTCCGAATCTGTATTCT
CTAAACCGGATTTATTCTCTGTATCTTGAGCCTAAGCCTTGGTACACGCTGTCAATCATGCCGAGCTCAAGTATCATGAA
AGATGTTCAGGCAGCCTATTTCAGTGAACTACAGCGCGTATTGATCCCTTCTATGGAAAATACGTTAGAGAAAGATCTGT
TTGTTTACGTTAACCTAGAAGACCAAGCAAAAACTTTGTCTTTGCTAAACAACTATCGCTTGCTGTTCAATCCTGAACGA
ACCAACATTACTGAACTCAAGAATTACTTTGTCACTACGCTAGAGGAGCAAGGCGAAGCAGACAGCGTCAATGTTGCACA
ACTTAGGGTCTTGCTTGATGACGTTTTTGCGCAGGATTTAGTTCCTATCAAGCCTAATTTTGATTTAGAAAGCCTAGCCA
AAAAGGTCATTAACCAAACTGGTATAGAGACTCTTTTGTATGAGCATATCCTGAACTCGCCAACCTATTCGAAGCGCATT
GATGTTCGTCAGGAGCTTGGGACCAACTTTAATCAGTTGCTGTCTTTCTCCCCTGACTACGTGGGATACTTGGTTCCTTA
CCTATTTACACCATCAGGCTTCAACGAATTGGACTTATCCGTCGATTCTCCAGTACTCAAAGACGCTCTAAAAGCGTACG
AGGGAGTTGCTGGCACTTCACCAAGTGCGCTAGAAATGTATCGTATCAGCCGAGACCTCAAGCAAATGTATCAGGGCGAT
TACATTAATTACTGGCGAGACTTTGCTACTCATATCCAAGTTAAAAGCATTTCAAATGCTGATGAGCTAAAACAGACGCT
TGCTGTACTAACAACAGCATCTAACAACCCTTTGGCTCAGCTGTATACGACTATCAGCAAATACACGTCTGTTGAGTTAA
TTCAGCCGGAAACTAAGAAGGAAGGTGAACAACCACCCGAGCAGGATATCGATAAGAAAGAGTCTGCACGACAAATCTAT
ATCGCGTTCAGCCAATACCACAAACAAGTTACCGCAGATGACCAAGGTAATAAGCCAATTGATGCGTTACTAGGGCAATT
TACAGAAGCAGAAACCTGGCTAGGCAAATTCTACGAGGCGGAAGATCCGCAAAAAGTGGCCTATCAAGCACTGACAGCTG
AAATAAAAACCAGTAACCCGATTTCACTTTTGGCACAGCAAGAGGCCTCTCAGCCTAGCATTTCAAAGCAGATACTCGCT
CAGATTACTAAGCAAACTAACGATCTTGTTATGAGCTTGGCACATGCCTATCTGAACAGCACATGGAAAACAGAGGTTTA
TCAGCCTTACGAAACAACCATTGCTGCTTACTATCCGTTTAACAAGACTGCAAGCCTAGATGCAAGCACGGCTGACGTTG
CAGCCTTCTTTAAAGTTAACGGAATCTTAGACCAGTTCTACCAAACAAAACTGAAGAGTTTCTCCACCGAAGAACGCTCT
CCATACTTGTATGGTTTGTTACCGAATACAGGGTTAGCGTTAGATCCCGCAGTGTGGCAAATGATAGACAAAGCTCGAGA
TATTCGAAATGCCCTATTCTTGGCGGATCCGCAAAATATGTCATTGCAATTCCAGCTTAAAGCCAAAGAGATGAGTTCAG
ATGTCACCGAGTTTATTATCCGAGGTGAAAAACCATTGTTTACTTATCAACACGGCCCGCGCCTATGGAGTAAACAAAGT
TGGAACGCAACTGCAATTGAGCAAGATGCGTTAGGCTTCCAGATAAAAGCACAAGCCAGCTCTATTGCTAACGAGAAATT
CGAAGGTAACTGGGCTTGGTTTAAGCTGATTGAACCAAGAGTTGCATCTACGACGTCTCAACAAACTGAAGTAGCCATTA
AGTATGGCGAAAGTCAGGTTGAGCTGAGTATCAAGACGCAGGGACAAAACAATCCATTTGTGCCGAATTTCTTCTCTGCC
TTCTCATTACCATCGAGTATCTAA