Detailed information of component protein


Summary

Component ID T6CP015904
Component protein type TssH
T6SS ID (Type) T6SS01280 experimental (Type i5)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome I
Sequence Protein sequence (871 a.a.); Nucleotide sequence (2613 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS13170
Coordinate (Strand) 2773243..2775855 (+)
NCBI ID WP_165579639.1
RefSeq NZ_CP048693
Uniprot ID UPI0013F40504
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.8e-40 600..767
AAA_lid_9 PF17871.3 3.8e-26 359..450
ClpB_D2-small PF10431.11 1.7e-11 773..845
AAA PF00004.31 1.3e-10 219..351
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-870 MTQVTLTNLVAKLSPELKQALEVSAGAAMNQNVPSIETEHWLLQLLSQQDKHLNSLIQSQNLSQDNLVNELSSKIARFPKGNEGQPTLSQALTEIVKDAWMIASVNYGHGEVISLHLIQAMLQQNVLGMNTLQLESLQSVSLESLQGLINKTAVARAKTGAAAADGTGGAPVGNDALSKYTTNLTQQALDGNIDPISGRNSEVRKAIDILCRKRQNNPIMVGEPGVGKTAVVEGLALRIAANEVPGALQGVQIHSLDLGLLQAGASVKGEFENRLKDVINEVKNSEKPIIVFIDEAHTLIGAGGAAGQNDAANLLKPALARGEFKTIAATTWAEYKKYFEKDPALTRRFQVVSIEEPNAEDAKQMLRGIAASLQKHHGAFIAESAIDAAVHLSIRYLPSRQLPDKAISLLDTASARIALTQGAKPEVIEALEQTIRYQQNEKAALEKENALFGIAEDEIAELTTEIAENEKKLTDYQARWKQEVDFVDQIKALQQEISDEQAEESVDKAKQDKLNELIDELGELQGEEPLVNAMVDDNTIAQVIANWTGIPVGNMMSDEIARLLSLEEELDKRVIGQNVAKQELAKAIRISRAGLTDSRKPIGVFLMCGPSGVGKTETAMALAEQLYGGSNDLTVINMTEFKEEHKISMLLGSPAGYVGFGEGGVLTEAIRRNPYSVLLLDEMEKAHPGVHDLFYQIFDKGHIKDSEGRTVDFKNTIIIMTSNAADQAICDVCADNSERLSNEELLEAIRPDLQHYFKPAFLGRTTIVPYYPLNDEELAKITEISLNRIKKKLAEQYQASFTWDEGFVDYVVGKNTDPTTGGRAVEQIINRSLMPKLAEECISRLSLQQPITQVSVTAASSEEGFELTIQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9854 - -


  Protein sequence: 871 a.a.    

>T6CP015904 NZ_CP048693:2773243-2775855 [Vibrio coralliilyticus OCN008] [TssH]
MTQVTLTNLVAKLSPELKQALEVSAGAAMNQNVPSIETEHWLLQLLSQQDKHLNSLIQSQNLSQDNLVNELSSKIARFPK
GNEGQPTLSQALTEIVKDAWMIASVNYGHGEVISLHLIQAMLQQNVLGMNTLQLESLQSVSLESLQGLINKTAVARAKTG
AAAADGTGGAPVGNDALSKYTTNLTQQALDGNIDPISGRNSEVRKAIDILCRKRQNNPIMVGEPGVGKTAVVEGLALRIA
ANEVPGALQGVQIHSLDLGLLQAGASVKGEFENRLKDVINEVKNSEKPIIVFIDEAHTLIGAGGAAGQNDAANLLKPALA
RGEFKTIAATTWAEYKKYFEKDPALTRRFQVVSIEEPNAEDAKQMLRGIAASLQKHHGAFIAESAIDAAVHLSIRYLPSR
QLPDKAISLLDTASARIALTQGAKPEVIEALEQTIRYQQNEKAALEKENALFGIAEDEIAELTTEIAENEKKLTDYQARW
KQEVDFVDQIKALQQEISDEQAEESVDKAKQDKLNELIDELGELQGEEPLVNAMVDDNTIAQVIANWTGIPVGNMMSDEI
ARLLSLEEELDKRVIGQNVAKQELAKAIRISRAGLTDSRKPIGVFLMCGPSGVGKTETAMALAEQLYGGSNDLTVINMTE
FKEEHKISMLLGSPAGYVGFGEGGVLTEAIRRNPYSVLLLDEMEKAHPGVHDLFYQIFDKGHIKDSEGRTVDFKNTIIIM
TSNAADQAICDVCADNSERLSNEELLEAIRPDLQHYFKPAFLGRTTIVPYYPLNDEELAKITEISLNRIKKKLAEQYQAS
FTWDEGFVDYVVGKNTDPTTGGRAVEQIINRSLMPKLAEECISRLSLQQPITQVSVTAASSEEGFELTIQ*

  Nucleotide sequence: 2613 bp    

>T6CP015904 NZ_CP048693:2773243-2775855 [Vibrio coralliilyticus OCN008] [TssH]
ATGACGCAAGTTACACTAACAAATCTAGTCGCTAAGCTGTCACCAGAGCTGAAACAAGCACTTGAAGTTTCAGCTGGTGC
CGCAATGAATCAAAATGTGCCTTCTATAGAGACAGAACACTGGTTGCTTCAGCTTCTTTCTCAGCAAGACAAGCATCTAA
ATAGCCTGATTCAATCACAGAATTTATCCCAAGATAACTTGGTTAACGAGTTATCTTCAAAAATCGCTCGTTTTCCTAAA
GGTAATGAAGGCCAGCCAACATTAAGCCAAGCGCTTACCGAAATCGTCAAAGATGCTTGGATGATTGCCTCTGTCAACTA
TGGCCATGGCGAAGTGATCAGTCTCCACTTGATTCAAGCTATGTTGCAACAAAACGTGCTGGGTATGAATACGCTTCAGC
TAGAAAGCTTACAAAGTGTTTCATTGGAATCTCTTCAAGGGCTAATCAATAAAACAGCCGTTGCCAGAGCAAAAACTGGA
GCTGCTGCAGCAGATGGTACTGGCGGTGCCCCTGTCGGCAATGACGCATTAAGTAAATACACAACGAATCTGACACAGCA
AGCATTGGACGGAAATATTGATCCTATCTCTGGTCGAAATTCAGAAGTGCGTAAAGCCATCGATATTCTGTGTAGAAAAC
GCCAAAACAACCCGATCATGGTCGGTGAGCCTGGTGTAGGTAAAACAGCAGTTGTCGAAGGCCTAGCATTACGCATCGCG
GCCAACGAAGTTCCTGGTGCCCTGCAAGGTGTACAGATCCATTCACTTGATCTTGGCTTACTTCAAGCAGGTGCAAGCGT
CAAAGGTGAGTTTGAAAATCGTCTAAAAGACGTTATCAACGAAGTGAAAAACAGCGAGAAGCCTATTATTGTCTTCATTG
ATGAAGCCCACACCTTGATCGGTGCAGGCGGTGCAGCTGGTCAAAATGATGCAGCGAACCTTCTCAAACCTGCTCTAGCA
CGTGGTGAGTTTAAAACCATCGCGGCGACCACTTGGGCAGAATACAAAAAATACTTCGAAAAAGACCCAGCTCTGACACG
ACGCTTCCAAGTAGTTTCAATTGAAGAGCCAAACGCTGAAGATGCCAAGCAAATGTTGCGTGGTATCGCAGCATCACTTC
AAAAACACCATGGAGCCTTCATTGCAGAATCGGCAATTGATGCTGCTGTTCATTTATCGATTCGTTACCTTCCAAGTCGC
CAACTGCCTGATAAAGCGATCAGCTTGCTTGATACTGCCAGCGCTCGTATCGCTTTAACACAAGGGGCTAAGCCAGAAGT
GATTGAGGCGCTTGAACAAACTATTCGCTACCAGCAAAACGAAAAGGCAGCGCTGGAAAAAGAGAACGCTCTGTTTGGTA
TTGCAGAAGATGAAATTGCAGAACTGACTACCGAAATTGCAGAAAACGAGAAAAAGCTGACAGACTATCAAGCTCGTTGG
AAGCAAGAAGTTGATTTTGTTGATCAGATCAAAGCGCTCCAACAGGAAATCAGCGATGAGCAGGCTGAAGAGTCAGTAGA
TAAAGCTAAGCAAGACAAACTCAATGAGCTCATCGATGAACTTGGTGAATTGCAGGGTGAAGAGCCTCTAGTTAATGCAA
TGGTTGATGACAACACCATTGCTCAGGTCATTGCTAACTGGACTGGTATTCCTGTCGGCAACATGATGAGCGACGAAATT
GCTCGCCTTCTTTCATTAGAAGAAGAATTGGATAAGCGTGTCATTGGTCAAAATGTTGCAAAGCAAGAGCTTGCCAAAGC
GATTCGTATTTCGCGTGCAGGCTTAACTGACAGCCGTAAGCCGATTGGCGTGTTCCTAATGTGTGGTCCAAGTGGTGTTG
GTAAAACTGAAACTGCGATGGCCCTTGCAGAGCAGCTGTACGGAGGTAGCAATGATCTGACGGTTATCAACATGACTGAG
TTCAAAGAGGAGCATAAAATTTCTATGTTACTTGGCTCTCCTGCTGGTTACGTTGGTTTCGGTGAAGGTGGCGTATTAAC
AGAAGCAATCCGTCGTAACCCATACTCAGTGCTACTTTTGGATGAGATGGAAAAAGCGCATCCAGGTGTTCACGACTTGT
TCTATCAGATTTTCGACAAGGGCCACATTAAAGACAGTGAAGGTAGAACGGTAGATTTCAAAAACACCATCATCATTATG
ACTTCAAATGCGGCGGATCAAGCCATCTGTGATGTCTGTGCGGACAACAGCGAACGATTGAGCAATGAAGAGTTACTTGA
AGCCATTCGTCCTGATCTCCAACATTACTTTAAGCCAGCGTTTTTGGGTCGTACAACCATCGTACCTTACTACCCACTAA
ATGATGAAGAGTTAGCTAAAATCACGGAGATATCTCTCAACCGCATTAAGAAAAAACTGGCAGAGCAGTATCAAGCGTCG
TTTACATGGGATGAAGGTTTTGTTGACTACGTGGTGGGCAAAAACACAGACCCGACTACAGGTGGTCGTGCTGTTGAGCA
GATCATCAACCGTTCATTGATGCCAAAATTAGCAGAGGAATGTATCAGTAGATTAAGCTTGCAACAGCCAATCACTCAAG
TATCTGTTACAGCCGCAAGCAGTGAGGAAGGATTCGAGCTTACTATTCAGTAA