Detailed information of component protein
Summary
| Component ID | T6CP015901 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01280  (Type i5) |
| Strain | Vibrio coralliilyticus OCN008 |
| Replicon | chromosome I |
| Sequence | Protein sequence (141 a.a.); Nucleotide sequence (423 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | G3U99_RS13155 |
| Coordinate (Strand) | 2770052..2770474 (+) |
| NCBI ID | WP_021457559.1 |
| RefSeq | NZ_CP048693 |
| Uniprot ID | UPI000391605A |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.6e-12 | 19..110 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-140 | MGFWKTFIDPRSSMQSEEIDDIKYHLTKLLESESSLVDIDDRFTELQRSNLRFGIEDVQLLSASLDQTQLALRLESYIRNFEPRLTQVMVELLERKDNENALVFNIIAKANTSKGEQELIFDSKISLNDLTTVMTEDSYD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9959 | - | - |
Protein sequence: 141 a.a.
>T6CP015901 NZ_CP048693:2770052-2770474 [Vibrio coralliilyticus OCN008] [TssE]
MGFWKTFIDPRSSMQSEEIDDIKYHLTKLLESESSLVDIDDRFTELQRSNLRFGIEDVQLLSASLDQTQLALRLESYIRN
FEPRLTQVMVELLERKDNENALVFNIIAKANTSKGEQELIFDSKISLNDLTTVMTEDSYD*
MGFWKTFIDPRSSMQSEEIDDIKYHLTKLLESESSLVDIDDRFTELQRSNLRFGIEDVQLLSASLDQTQLALRLESYIRN
FEPRLTQVMVELLERKDNENALVFNIIAKANTSKGEQELIFDSKISLNDLTTVMTEDSYD*
Nucleotide sequence: 423 bp
>T6CP015901 NZ_CP048693:2770052-2770474 [Vibrio coralliilyticus OCN008] [TssE]
ATGGGATTCTGGAAAACGTTTATAGATCCTCGAAGCTCGATGCAGAGCGAAGAGATTGATGATATTAAATATCATCTCAC
CAAACTCTTAGAATCGGAGTCTTCTCTCGTTGATATCGACGACCGATTTACAGAACTTCAGCGCTCTAACCTTCGCTTTG
GCATTGAAGATGTGCAACTGCTCAGTGCCAGCTTAGACCAAACTCAGTTGGCTCTTAGGCTAGAAAGCTATATTCGAAAC
TTCGAGCCTCGTTTAACACAAGTCATGGTTGAATTACTTGAGCGAAAAGACAACGAAAATGCTTTGGTATTCAACATTAT
CGCGAAAGCGAATACCTCGAAAGGAGAGCAAGAGCTGATTTTCGATTCAAAGATCTCTCTAAATGATTTAACAACAGTAA
TGACGGAGGATAGTTATGACTGA
ATGGGATTCTGGAAAACGTTTATAGATCCTCGAAGCTCGATGCAGAGCGAAGAGATTGATGATATTAAATATCATCTCAC
CAAACTCTTAGAATCGGAGTCTTCTCTCGTTGATATCGACGACCGATTTACAGAACTTCAGCGCTCTAACCTTCGCTTTG
GCATTGAAGATGTGCAACTGCTCAGTGCCAGCTTAGACCAAACTCAGTTGGCTCTTAGGCTAGAAAGCTATATTCGAAAC
TTCGAGCCTCGTTTAACACAAGTCATGGTTGAATTACTTGAGCGAAAAGACAACGAAAATGCTTTGGTATTCAACATTAT
CGCGAAAGCGAATACCTCGAAAGGAGAGCAAGAGCTGATTTTCGATTCAAAGATCTCTCTAAATGATTTAACAACAGTAA
TGACGGAGGATAGTTATGACTGA