Detailed information of component protein


Summary

Component ID T6CP015900
Component protein type TssC
T6SS ID (Type) T6SS01280 experimental (Type i5)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome I
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS13145
Coordinate (Strand) 2767118..2768596 (+)
NCBI ID WP_006962088.1
RefSeq NZ_CP048693
Uniprot ID A0A086WRN7_9VIBR, A0A0A0SUZ7_9VIBR, A0A6B8N7N3_9VIBR, A0A649YPD2_9VIBR
KEGG ID vcy:IX92_06615
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.9e-115 64..371
VipB_2 PF18945.2 5.1e-38 381..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MSTEAENQTQTEAAEGSLSFLDRAIEATTQTPADTTKELFSVLAEQALSGTVTWDKNVTKTIENAISEIDKKLSKQLSEVMQQKDLQKLEGSWRGLQKLVKESELGRDLKIKMVDFSQEELLDQFEDAPAIDRSPLFNAVYQGEFGTAGGEPYGTFIGDYEFSAKDEDVALLRYMGEVAAACHAPFVAAANAQMFEFNDFTTFDEGKPVAAGFDSPAYAAWNAFRESDDARYVTLTLPRTLARLPYGAKGLGTELFDYEELGTDMDGNPNPENNDQLVWSNAAYDLGLKMTQAYTASGWCTSIRGLDNGGKVENLPNLTYKTEAGDLVQQCPTEVNLTDEREKELSDLGFLPLVHYKNSNYGVFIGGQTTQKPKTYTDPDATANAAISARLPYIMASSRIAHYLKVMGRDKLGSNLEAPDIQRELQLWIDQYTNAGAIGNEQRAKTPLCESRIEVVEQPGRPGSYSAVAHLRPWLQLEELTTSVRMVAKIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9805 - -


  Protein sequence: 493 a.a.    

>T6CP015900 NZ_CP048693:2767118-2768596 [Vibrio coralliilyticus OCN008] [TssC]
MSTEAENQTQTEAAEGSLSFLDRAIEATTQTPADTTKELFSVLAEQALSGTVTWDKNVTKTIENAISEIDKKLSKQLSEV
MQQKDLQKLEGSWRGLQKLVKESELGRDLKIKMVDFSQEELLDQFEDAPAIDRSPLFNAVYQGEFGTAGGEPYGTFIGDY
EFSAKDEDVALLRYMGEVAAACHAPFVAAANAQMFEFNDFTTFDEGKPVAAGFDSPAYAAWNAFRESDDARYVTLTLPRT
LARLPYGAKGLGTELFDYEELGTDMDGNPNPENNDQLVWSNAAYDLGLKMTQAYTASGWCTSIRGLDNGGKVENLPNLTY
KTEAGDLVQQCPTEVNLTDEREKELSDLGFLPLVHYKNSNYGVFIGGQTTQKPKTYTDPDATANAAISARLPYIMASSRI
AHYLKVMGRDKLGSNLEAPDIQRELQLWIDQYTNAGAIGNEQRAKTPLCESRIEVVEQPGRPGSYSAVAHLRPWLQLEEL
TTSVRMVAKIPG*

  Nucleotide sequence: 1479 bp    

>T6CP015900 NZ_CP048693:2767118-2768596 [Vibrio coralliilyticus OCN008] [TssC]
ATGAGTACAGAAGCTGAAAATCAAACGCAAACCGAAGCTGCAGAAGGTTCGCTGAGTTTTCTAGACAGAGCAATTGAGGC
CACCACTCAAACGCCTGCTGATACAACAAAAGAGCTGTTCTCAGTTCTGGCTGAACAAGCGCTTTCCGGTACAGTAACGT
GGGATAAGAACGTTACTAAAACCATCGAAAATGCAATTTCAGAAATTGACAAAAAGCTGTCAAAGCAGCTTTCTGAAGTC
ATGCAACAAAAAGACCTTCAGAAACTTGAAGGCTCATGGCGTGGCTTGCAGAAGTTAGTGAAAGAAAGTGAATTAGGTCG
TGATCTTAAAATCAAAATGGTTGATTTCTCTCAAGAAGAGCTGTTAGACCAATTTGAAGATGCACCGGCCATTGACCGTA
GTCCACTATTCAACGCAGTTTACCAAGGCGAATTTGGTACTGCAGGTGGTGAACCTTACGGTACATTCATTGGCGACTAC
GAATTCAGTGCAAAAGATGAAGATGTTGCCCTACTTCGCTACATGGGTGAAGTTGCTGCAGCGTGTCACGCACCATTTGT
TGCCGCAGCGAACGCTCAAATGTTCGAATTCAACGACTTCACCACTTTTGATGAAGGCAAACCTGTTGCTGCTGGTTTTG
ATTCGCCGGCATACGCAGCTTGGAACGCATTCCGTGAAAGTGATGACGCGCGTTATGTAACTCTAACTCTACCAAGAACG
CTTGCACGCCTACCATATGGTGCTAAAGGTCTTGGAACTGAGCTATTCGATTATGAAGAGCTTGGTACAGATATGGATGG
TAATCCAAATCCAGAAAATAACGACCAACTTGTCTGGTCAAACGCAGCTTACGATCTTGGTCTTAAAATGACTCAAGCTT
ACACTGCGTCAGGCTGGTGTACTTCTATTCGTGGTCTGGACAACGGCGGTAAAGTTGAAAACCTCCCTAACCTGACTTAC
AAAACGGAAGCTGGCGATCTCGTTCAACAGTGTCCAACAGAAGTTAACCTAACGGATGAGCGTGAAAAAGAGCTAAGTGA
TTTAGGTTTCTTGCCTCTTGTTCACTACAAGAACTCAAACTACGGTGTATTCATTGGTGGTCAAACGACCCAAAAACCAA
AGACATATACAGACCCAGACGCAACAGCTAATGCTGCTATCTCTGCGCGTCTTCCATACATCATGGCGAGTAGCCGTATT
GCTCATTACCTGAAAGTAATGGGGCGTGACAAACTAGGTTCAAACCTTGAAGCTCCGGATATTCAACGTGAACTTCAACT
TTGGATTGATCAATACACCAACGCTGGTGCGATTGGCAACGAGCAACGTGCTAAAACGCCACTTTGCGAGTCTAGAATTG
AAGTAGTCGAGCAGCCAGGTCGACCTGGTTCTTACTCGGCGGTTGCACACCTACGACCGTGGCTACAACTGGAAGAGCTA
ACAACCTCTGTACGTATGGTTGCTAAAATTCCAGGTTAA