Detailed information of component protein


Summary

Component ID T6CP015899
Component protein type TssB
T6SS ID (Type) T6SS01280 experimental (Type i5)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome I
Sequence Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) G3U99_RS13140
Coordinate (Strand) 2766615..2767121 (+)
NCBI ID WP_006962089.1
RefSeq NZ_CP048693
Uniprot ID A0A086WRN8_9VIBR, A0A097QKF1_9VIBR, A0A7Y3ZP66_9VIBR, A0A6B8MWN1_9VIBR, A0A649YPE6_9VIBR
KEGG ID vct:JV59_31905, vcy:IX92_06620
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 5.5e-57 8..159

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-168 VALNSQHKRVSKNRVSITYDVETNGAVETKELPFVVGVIGDYSGHKQDKEDVEDRTFYNVDKDNFDTVMKRVGPELSLKVDNVLADDDSQFEAALKFNSMKDFEPEAIVEQVEPLKKLVETRNQLKVLLSKADRSRDLEKLLKEVLQSADTINALSEELGVNKEGGEE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9916 - -



  Protein sequence: 169 a.a.    

>T6CP015899 NZ_CP048693:2766615-2767121 [Vibrio coralliilyticus OCN008] [TssB]
VALNSQHKRVSKNRVSITYDVETNGAVETKELPFVVGVIGDYSGHKQDKEDVEDRTFYNVDKDNFDTVMKRVGPELSLKV
DNVLADDDSQFEAALKFNSMKDFEPEAIVEQVEPLKKLVETRNQLKVLLSKADRSRDLEKLLKEVLQSADTINALSEELG
VNKEGGEE*

  Nucleotide sequence: 507 bp    

>T6CP015899 NZ_CP048693:2766615-2767121 [Vibrio coralliilyticus OCN008] [TssB]
GTGGCACTTAATTCCCAACACAAACGTGTAAGTAAAAACCGCGTAAGTATTACTTACGATGTGGAAACTAATGGCGCTGT
AGAAACCAAAGAACTCCCATTTGTGGTTGGGGTAATTGGTGACTACTCTGGTCATAAACAAGACAAGGAAGACGTTGAAG
ATCGTACGTTCTACAACGTTGACAAAGACAACTTTGACACCGTGATGAAACGCGTTGGCCCAGAGTTGTCTTTGAAAGTC
GACAATGTACTTGCAGACGATGATAGCCAGTTTGAAGCTGCTTTGAAGTTCAACTCAATGAAAGACTTTGAACCTGAAGC
TATCGTCGAGCAAGTAGAACCTCTTAAAAAGCTTGTTGAAACCCGTAACCAGCTAAAAGTACTACTTTCAAAAGCAGATC
GCTCTCGCGATCTCGAGAAGCTGCTGAAAGAAGTGCTCCAAAGTGCAGATACTATCAATGCATTATCGGAAGAGCTTGGT
GTCAATAAGGAAGGAGGCGAAGAATGA