Detailed information of component protein


Summary

Component ID T6CP015897
Component protein type TssA
T6SS ID (Type) T6SS01280 experimental (Type i5)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome I
Sequence Protein sequence (468 a.a.); Nucleotide sequence (1404 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS13130
Coordinate (Strand) 2764636..2766039 (+)
NCBI ID WP_021458174.1
RefSeq NZ_CP048693
Uniprot ID UPI0003916C62
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.6e-18 8..154
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-467 MVDIEALLAPISEEHPSGTYLKLDRSAYRTLRNNYNTAQSSFRQLIETPDASSDEALIEANQSNWDLLRTSTFEALTSQTKDIEFLGWYIASQPFTASPYENLASATKVLAGFIDSFWGTLNPHPPVEKLKSSDEAGQTKELIEFRLKPLLQLVGESQDSTALYMPLQMISLIDDVSFGDFLRAERNGTMAELKDRAQSLFSRDVEETLTKLSESYQNFDAAEKLIAKECQAAGVAPASFKFVKANLADLINAIQYLVGDKFARWPLDSEYKPVTDEPQPEAAVAPQATAPVEASNAEPASAEATNADPVAQNQVQQAHQASVVQQVPVAGVITSRDQAFHELRKISDFFQQTEPHSPIPFLLERAIRWGYMSLPELLNEMTGGNSGVIAHINQVSGMDNLSQADLSNKPSASAQTLSSASGLTQPDVHVPPPPASAPSEPVTTSEQHTQTEANTTQPESGISNFEW


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9939 - -


  Protein sequence: 468 a.a.    

>T6CP015897 NZ_CP048693:2764636-2766039 [Vibrio coralliilyticus OCN008] [TssA]
MVDIEALLAPISEEHPSGTYLKLDRSAYRTLRNNYNTAQSSFRQLIETPDASSDEALIEANQSNWDLLRTSTFEALTSQT
KDIEFLGWYIASQPFTASPYENLASATKVLAGFIDSFWGTLNPHPPVEKLKSSDEAGQTKELIEFRLKPLLQLVGESQDS
TALYMPLQMISLIDDVSFGDFLRAERNGTMAELKDRAQSLFSRDVEETLTKLSESYQNFDAAEKLIAKECQAAGVAPASF
KFVKANLADLINAIQYLVGDKFARWPLDSEYKPVTDEPQPEAAVAPQATAPVEASNAEPASAEATNADPVAQNQVQQAHQ
ASVVQQVPVAGVITSRDQAFHELRKISDFFQQTEPHSPIPFLLERAIRWGYMSLPELLNEMTGGNSGVIAHINQVSGMDN
LSQADLSNKPSASAQTLSSASGLTQPDVHVPPPPASAPSEPVTTSEQHTQTEANTTQPESGISNFEW*

  Nucleotide sequence: 1404 bp    

>T6CP015897 NZ_CP048693:2764636-2766039 [Vibrio coralliilyticus OCN008] [TssA]
ATGGTTGATATTGAAGCACTATTGGCACCTATCTCAGAAGAACACCCATCAGGTACATACCTGAAGTTAGATCGTAGTGC
CTATCGTACTTTGAGAAACAACTACAACACGGCACAATCTTCTTTCCGTCAACTTATCGAAACACCAGATGCGTCTAGCG
ATGAAGCGCTAATCGAAGCCAACCAAAGTAATTGGGATTTACTGCGCACCTCAACGTTTGAGGCGCTAACATCTCAGACC
AAAGATATCGAGTTTTTAGGTTGGTACATTGCCAGCCAACCTTTCACAGCTTCACCGTATGAAAACCTAGCAAGTGCAAC
AAAAGTTCTAGCGGGTTTCATCGACTCGTTTTGGGGAACTCTAAACCCCCACCCTCCAGTCGAAAAGTTAAAAAGTAGCG
ATGAAGCTGGTCAGACAAAAGAACTAATCGAATTTCGTTTAAAGCCTCTGCTGCAACTTGTTGGTGAAAGCCAAGATTCC
ACTGCGCTTTATATGCCACTACAAATGATCTCTCTTATTGACGATGTGTCTTTTGGCGATTTTCTGCGTGCAGAGAGAAA
CGGCACAATGGCGGAGTTAAAAGATAGAGCGCAATCACTGTTTTCTCGCGATGTAGAAGAGACGCTCACAAAACTTTCTG
AAAGCTATCAGAACTTTGATGCTGCTGAAAAACTGATTGCTAAAGAATGTCAGGCTGCTGGTGTAGCTCCTGCCAGCTTT
AAATTCGTAAAAGCAAACTTAGCCGATTTGATCAATGCTATTCAATATCTTGTGGGAGACAAGTTTGCTCGATGGCCGCT
AGATAGTGAGTACAAACCTGTCACAGATGAACCTCAGCCAGAAGCGGCAGTAGCACCTCAAGCAACTGCACCTGTCGAAG
CATCAAATGCTGAACCAGCCTCTGCTGAAGCCACCAATGCAGATCCTGTCGCCCAAAACCAAGTTCAGCAAGCGCATCAA
GCTTCCGTCGTGCAGCAAGTCCCAGTAGCTGGTGTAATCACCAGCCGTGATCAAGCGTTTCATGAATTACGTAAGATTTC
AGATTTTTTTCAGCAAACAGAACCACATAGCCCTATTCCATTTTTGCTAGAACGAGCAATTCGATGGGGCTACATGAGCC
TACCTGAACTGCTAAATGAAATGACAGGTGGTAACTCAGGAGTAATTGCTCATATCAATCAAGTATCAGGTATGGACAAC
CTATCTCAAGCTGACCTTAGTAATAAACCATCAGCGTCAGCACAAACTTTATCCTCCGCATCTGGGCTCACTCAGCCAGA
TGTTCACGTTCCGCCTCCGCCGGCTTCAGCTCCTTCAGAGCCAGTCACAACGAGCGAACAACATACTCAAACTGAAGCGA
ACACTACTCAACCTGAAAGTGGTATTAGTAACTTCGAGTGGTAA