Detailed information of component protein


Summary

Component ID T6CP015896
Component protein type TssI
T6SS ID (Type) T6SS01280 experimental (Type i5)
Strain Vibrio coralliilyticus OCN008
Replicon chromosome I
Sequence Protein sequence (661 a.a.); Nucleotide sequence (1983 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) G3U99_RS13115
Coordinate (Strand) 2761384..2763366 (+)
NCBI ID WP_021458175.1
RefSeq NZ_CP048693
Uniprot ID UPI0003916C84
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.7e-57 31..334
Phage_base_V PF04717.14 6.6e-17 380..447
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-660 MADKYSASASLISAKDYKNQEHTVSEFTVTQALSTPFEITAILVSSSFSVKDQLGQLLTINRYSNESGSNKLQRSFNGVIARIEQMGLDANLQFMQYRITLKPWFWLLTHTHSFRVYQTQSTKDIVSDIFDNAGFKGKYKLSSLPSTKREYCLQYNESDFDFVTRLLAEEGLHYYFEHESGDHTMVIQDAQSPFDKADVAKFDMQETPSGSLPLIKSWAPVMSFHGASVELTAYDYSQSKLVTSKAKTSSNTIANNTKLVSVHYPDLGISGDMTDLSSNLAKRRIEQIEQDYQSVIAQAEHDMFEIATWFSLSSHLDKSQLGDFSVVKTSTHYADDVRCATEVKLIPKATPTYPKPRSKQVVNGLQSATVAGSTAGEINQDDQGRVRIQFHWDTEASGDKTSCYVRVAQMMAGSGYGTQFIPRVGQEVLVSFIDGDPDQPIITGSVYNSKNAPPYKEANATKTGIKTKLTGQTNELYFDDKKDNELVYLHAAKDITQEVENNHTETVKGELSQSVTKAMTIATEDNYTLNVTKAMSGSAKSITLEADDSIDLKVGSSKISISSSSISIEATNIDIKASSALNLEGTNVTSKATSANKVSGTTTALEATSSNSIKGLSIAIKASTTLSAEGSLSAEFKSGLKGTFDGGVLGELKGAIVKVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9730 - -


  Protein sequence: 661 a.a.    

>T6CP015896 NZ_CP048693:2761384-2763366 [Vibrio coralliilyticus OCN008] [TssI]
MADKYSASASLISAKDYKNQEHTVSEFTVTQALSTPFEITAILVSSSFSVKDQLGQLLTINRYSNESGSNKLQRSFNGVI
ARIEQMGLDANLQFMQYRITLKPWFWLLTHTHSFRVYQTQSTKDIVSDIFDNAGFKGKYKLSSLPSTKREYCLQYNESDF
DFVTRLLAEEGLHYYFEHESGDHTMVIQDAQSPFDKADVAKFDMQETPSGSLPLIKSWAPVMSFHGASVELTAYDYSQSK
LVTSKAKTSSNTIANNTKLVSVHYPDLGISGDMTDLSSNLAKRRIEQIEQDYQSVIAQAEHDMFEIATWFSLSSHLDKSQ
LGDFSVVKTSTHYADDVRCATEVKLIPKATPTYPKPRSKQVVNGLQSATVAGSTAGEINQDDQGRVRIQFHWDTEASGDK
TSCYVRVAQMMAGSGYGTQFIPRVGQEVLVSFIDGDPDQPIITGSVYNSKNAPPYKEANATKTGIKTKLTGQTNELYFDD
KKDNELVYLHAAKDITQEVENNHTETVKGELSQSVTKAMTIATEDNYTLNVTKAMSGSAKSITLEADDSIDLKVGSSKIS
ISSSSISIEATNIDIKASSALNLEGTNVTSKATSANKVSGTTTALEATSSNSIKGLSIAIKASTTLSAEGSLSAEFKSGL
KGTFDGGVLGELKGAIVKVN*

  Nucleotide sequence: 1983 bp    

>T6CP015896 NZ_CP048693:2761384-2763366 [Vibrio coralliilyticus OCN008] [TssI]
ATGGCTGATAAGTATTCAGCGTCGGCTAGCTTAATTTCGGCAAAGGACTATAAAAATCAAGAGCATACGGTAAGTGAATT
TACCGTAACTCAAGCTTTGTCTACTCCTTTTGAGATTACCGCTATACTCGTTTCTTCTAGTTTCAGTGTTAAAGACCAAT
TAGGTCAATTACTGACGATTAACCGTTATTCCAACGAGTCCGGCAGCAATAAGCTACAACGTTCTTTCAATGGCGTGATT
GCTCGTATTGAACAAATGGGCCTAGACGCTAACCTGCAATTTATGCAGTACCGAATTACTCTCAAGCCTTGGTTTTGGCT
ACTAACGCATACTCACTCATTTCGCGTCTATCAAACTCAGTCGACTAAAGACATCGTCAGTGACATCTTCGATAATGCAG
GCTTCAAAGGAAAGTACAAGCTCTCTAGTTTGCCTTCCACAAAAAGAGAGTACTGCCTCCAGTACAATGAGTCTGACTTT
GATTTTGTTACTCGATTACTTGCCGAAGAAGGCCTGCACTACTACTTCGAGCACGAGTCTGGCGACCATACAATGGTCAT
TCAAGATGCTCAGTCCCCTTTCGACAAAGCCGACGTCGCCAAATTTGATATGCAGGAAACCCCTTCCGGTAGCCTCCCAC
TGATAAAGTCTTGGGCTCCTGTTATGTCTTTCCATGGCGCGAGTGTTGAGTTAACGGCGTATGACTACTCGCAGTCTAAA
TTAGTAACAAGCAAAGCCAAAACAAGCAGCAATACGATTGCAAACAATACGAAACTGGTATCCGTCCACTATCCTGATTT
GGGTATAAGTGGGGATATGACTGACTTATCTAGCAACCTGGCTAAAAGACGCATTGAGCAAATAGAACAAGATTATCAAT
CTGTTATTGCACAGGCTGAACACGATATGTTCGAGATTGCGACGTGGTTTTCCTTGTCCAGCCATTTAGACAAATCTCAG
CTTGGTGATTTCTCGGTTGTCAAAACATCCACACACTACGCGGATGATGTTCGATGCGCCACTGAAGTAAAACTGATCCC
GAAAGCCACACCGACTTACCCTAAGCCACGTTCCAAGCAAGTCGTCAATGGTTTGCAAAGTGCTACAGTTGCAGGCTCAA
CAGCAGGTGAAATCAACCAAGATGACCAAGGCAGAGTCCGTATTCAATTTCATTGGGACACTGAAGCCAGCGGAGACAAA
ACCAGTTGTTACGTGCGTGTCGCGCAAATGATGGCAGGTAGCGGCTATGGGACGCAGTTTATTCCACGAGTAGGTCAAGA
AGTACTGGTTTCCTTTATTGACGGCGACCCTGATCAGCCAATCATTACAGGCAGTGTTTACAACAGTAAAAACGCGCCTC
CTTATAAAGAAGCAAACGCGACCAAAACAGGTATAAAGACGAAGTTAACAGGTCAGACAAATGAGCTTTACTTCGACGAC
AAGAAAGATAACGAGCTAGTTTATCTTCATGCTGCCAAAGACATTACTCAGGAGGTTGAAAACAATCATACTGAAACCGT
TAAAGGCGAATTGAGCCAGTCGGTGACGAAAGCGATGACAATTGCGACAGAAGACAATTACACCCTGAACGTCACAAAAG
CAATGAGTGGTTCAGCGAAGTCCATCACGCTCGAAGCTGATGACTCCATCGACCTCAAAGTCGGCTCTAGCAAAATTTCG
ATATCTTCGTCATCTATTTCTATTGAAGCTACGAACATCGATATCAAAGCAAGCAGTGCGCTCAATCTGGAAGGAACCAA
TGTCACCAGCAAAGCGACATCTGCGAACAAAGTTTCCGGCACCACAACTGCACTTGAAGCAACCAGTTCAAACAGCATCA
AGGGATTAAGTATTGCGATTAAAGCCAGCACAACATTAAGTGCCGAGGGTTCACTAAGTGCTGAATTCAAATCTGGCCTG
AAAGGCACATTCGATGGTGGCGTACTAGGCGAACTGAAAGGCGCCATTGTGAAGGTAAACTAA