Detailed information of component protein


Summary

Component ID T6CP015870
Component protein type TssL
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (261 a.a.); Nucleotide sequence (783 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11845
Coordinate (Strand) 82157..82939 (+)
NCBI ID WP_006491869.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6Q9_BURCJ, A0A364GSZ5_9BURK, A0A1D2PJ49_9BURK
KEGG ID bcj:BCAL0337
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 8.6e-58 31..229
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-208 MSYAPSLFGDNAPAPLHTPASTDSAFQARSLLDLLYDGFFMLFLLKNGREPDSASEFSTRIQEFLSDFERGAKKLNIAAEDVYGAKFAFCAAIDEMVLSSQFKIRADWERRPLQLVLFGEQLAGEKFFQYLEEGRAQGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARLGDEIAHMKGKRAPFAPHWPLPDQIAHRLKREVP
Transmembrane helix 209-231 VWAIGTVFALVALLGYLGLNTYL
Inside 232-260 KDKTLQALAPYSQVIKVGPESANLTISLP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9848 - -


  Protein sequence: 261 a.a.    

>T6CP015870 NZ_LAUA01000004:82157-82939 [Burkholderia cenocepacia] [TssL]
MSYAPSLFGDNAPAPLHTPASTDSAFQARSLLDLLYDGFFMLFLLKNGREPDSASEFSTRIQEFLSDFERGAKKLNIAAE
DVYGAKFAFCAAIDEMVLSSQFKIRADWERRPLQLVLFGEQLAGEKFFQYLEEGRAQGAARLQSLEVFHMCLLLGFQGKY
LLEGPEKLAYLTARLGDEIAHMKGKRAPFAPHWPLPDQIAHRLKREVPVWAIGTVFALVALLGYLGLNTYLKDKTLQALA
PYSQVIKVGPESANLTISLP*

  Nucleotide sequence: 783 bp    

>T6CP015870 NZ_LAUA01000004:82157-82939 [Burkholderia cenocepacia] [TssL]
ATGAGCTACGCGCCTTCCTTGTTCGGCGACAACGCGCCGGCACCGCTGCATACCCCGGCGTCGACGGACTCCGCGTTCCA
GGCCCGTTCGCTGCTCGATTTGCTGTACGACGGGTTCTTCATGCTGTTCCTGCTCAAGAACGGACGGGAGCCGGACAGCG
CCAGCGAGTTCAGCACGCGGATCCAGGAATTCCTGTCGGATTTCGAGCGCGGCGCGAAGAAGCTGAATATCGCCGCCGAG
GACGTGTACGGCGCGAAGTTCGCGTTCTGCGCGGCCATCGACGAGATGGTGCTGTCGTCGCAGTTCAAGATCCGCGCGGA
CTGGGAACGCCGGCCGCTGCAGCTCGTGTTGTTCGGCGAGCAGCTCGCCGGCGAGAAGTTCTTCCAGTATCTCGAGGAAG
GTCGTGCGCAGGGTGCGGCACGGCTGCAGTCGCTCGAGGTGTTCCATATGTGCCTGCTGCTCGGGTTCCAGGGCAAGTAC
CTGCTCGAAGGGCCGGAAAAGCTCGCGTACCTGACCGCGCGGCTGGGCGACGAGATCGCGCACATGAAGGGCAAGCGCGC
GCCGTTCGCGCCGCACTGGCCGCTGCCGGACCAGATCGCGCACCGCTTGAAGCGCGAGGTGCCGGTGTGGGCGATCGGGA
CCGTGTTCGCGCTGGTGGCGCTGCTCGGGTACCTCGGGCTCAACACGTACCTGAAGGACAAGACGCTGCAAGCGCTCGCG
CCGTATTCGCAGGTGATCAAGGTCGGGCCGGAGTCGGCCAACCTGACGATCTCGTTGCCGTAA