Detailed information of component protein


Summary

Component ID T6CP015869
Component protein type TssK
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11840
Coordinate (Strand) 80814..82160 (+)
NCBI ID WP_006477098.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6R0_BURCJ, A0A364GSZ1_9BURK, A0A3N8HNQ3_9BURK, A0A0H2XRS4_BURCA, A2VTE5_9BURK, B1JUN4_BURCC, A0A109ELU1_9BURK
KEGG ID bcj:BCAL0338, bcn:Bcen_2642, bcm:Bcenmc03_0442
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1e-140 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRIDRDALGSNVLRVAELALVFPDGALYAAPQADDLPPPIALDTLPDGINEFVFYLALHPLRENGTNYSDDPAAGFMTRFVSEQTSVADNFTDAAEADITFLKTQVKLIAHSEPRDQLLSVPLVRVRRTATSGFEIDDSFVPPCLAIEASPILHQRLRQLVDALQAKVNALYGFHREPSKNIIEFRSGDIASFWLLHTANAAFATLAHLHQHAALHPERLFQELLRLAGQLMTFSKGYTLADLPVYRHDDPGPSFARLDLMLRELLDTVISTRYFAITLDEVRPSFHLGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPAIPVRPGACYFALDSRSPLYERMLQAQSAMIYAPTGINDLKFELIAVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9971 - -


  Protein sequence: 449 a.a.    

>T6CP015869 NZ_LAUA01000004:80814-82160 [Burkholderia cenocepacia] [TssK]
MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRIDRDALGSNVLRVAELALVFPDGALYAAPQA
DDLPPPIALDTLPDGINEFVFYLALHPLRENGTNYSDDPAAGFMTRFVSEQTSVADNFTDAAEADITFLKTQVKLIAHSE
PRDQLLSVPLVRVRRTATSGFEIDDSFVPPCLAIEASPILHQRLRQLVDALQAKVNALYGFHREPSKNIIEFRSGDIASF
WLLHTANAAFATLAHLHQHAALHPERLFQELLRLAGQLMTFSKGYTLADLPVYRHDDPGPSFARLDLMLRELLDTVISTR
YFAITLDEVRPSFHLGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPA
IPVRPGACYFALDSRSPLYERMLQAQSAMIYAPTGINDLKFELIAVTS*

  Nucleotide sequence: 1347 bp    

>T6CP015869 NZ_LAUA01000004:80814-82160 [Burkholderia cenocepacia] [TssK]
ATGAGTTATTCGGCCAAGGTGCTGTGGGGGGAAGGGCTGTTCCTCCGGCCTCAACACTTTCAGCGGCAGGACGCGTACCA
CGAGGCGCGCCTGTTCGAGTCCATCCAGGCGATCCAGCCATACAACTGGGGCGTGCGCTCGGTGCGCATCGACCGCGACG
CGCTCGGCAGCAACGTGCTGCGGGTGGCCGAACTCGCGCTCGTGTTCCCGGACGGCGCGCTGTATGCCGCGCCGCAGGCC
GACGACCTGCCGCCGCCGATCGCACTGGATACGTTGCCCGACGGCATCAACGAATTCGTGTTCTATCTCGCGCTGCACCC
GCTGCGCGAGAACGGCACCAACTACAGCGACGATCCGGCCGCCGGCTTCATGACGCGGTTCGTCAGCGAGCAGACGAGCG
TCGCCGACAACTTCACCGACGCCGCCGAAGCCGACATCACGTTCCTGAAGACGCAGGTCAAGCTGATCGCGCACAGCGAG
CCGCGCGACCAGCTGCTGTCGGTGCCGCTCGTACGCGTGCGCCGCACCGCGACGTCCGGCTTCGAGATCGACGACAGCTT
CGTGCCGCCGTGCCTCGCGATCGAAGCGTCGCCGATCCTGCACCAGCGGCTGCGCCAGCTGGTCGACGCGCTGCAGGCGA
AGGTGAACGCGCTGTACGGCTTTCACCGCGAGCCGTCGAAGAACATCATCGAGTTCCGCTCGGGCGACATCGCGTCGTTC
TGGCTGCTGCACACGGCGAACGCCGCATTCGCGACGCTCGCGCACCTGCACCAGCATGCGGCGCTGCATCCGGAGCGGCT
GTTCCAGGAGCTGCTGCGCCTCGCCGGCCAGTTGATGACGTTCTCGAAGGGCTATACGCTCGCCGACCTGCCCGTGTACC
GCCACGACGATCCGGGCCCGAGCTTCGCGCGTCTCGACCTGATGCTGCGCGAACTGCTCGACACCGTGATCTCGACGCGC
TATTTCGCGATCACGCTCGACGAGGTGCGCCCGTCGTTCCACCTCGGCCGCCTCGATTCCGGCAAGATCGACGACAAGAC
CGAGTTCTACCTCGCAGTGTCCGCGGACATGCCGAGCGTCGAGCTCGTCGATGCGGTGCCGGCCCGCTTCAAGGTCGGCG
CGCCGGACGACGTCGACAAGCTCGTGCTGTCGGCGATGCCCGGCGTGCGGCTGTCGTACACGCCGCAGGTGCCGCCCGCG
ATTCCGGTGCGCCCCGGCGCGTGCTACTTCGCGCTCGATTCGCGCAGCCCGCTGTACGAGCGCATGCTGCAGGCCCAGTC
CGCGATGATCTACGCGCCGACTGGCATCAATGACCTGAAATTCGAACTGATCGCGGTCACATCATGA