Detailed information of component protein


Summary

Component ID T6CP015864
Component protein type TssE
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11810
Coordinate (Strand) 75906..76391 (-)
NCBI ID WP_006477092.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6R6_BURCJ, A0A364GSY5_9BURK, A0A095FYD8_BURCE, A0A0H2XTR9_BURCA, A2VTD9_9BURK, B1JUP0_BURCC, Q39K53_BURL3, A0A1D7ZEB8_9BURK, A0A1V2W7A7_9BURK
KEGG ID bstl:BBJ41_12135, bcm:Bcenmc03_0448, bced:DM42_1363, bcj:BCAL0344, bur:Bcep18194_A3562, bcn:Bcen_2636
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.1e-21 32..132
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MKRFEPSFLDKLFDDEPHLPASAAMRQLSLDELKNTVARDVEAILNTRIAHTENELAALPECQKSVLTYGLNDFAGLSLASHYDRAFICKSIQQAIARHEPRLQQVQVTFELNEQATNALYFAIQALLVVHPAEEPVSFDAMLQPSTLQYSVTRARAARMQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9842 - -


  Protein sequence: 162 a.a.    

>T6CP015864 NZ_LAUA01000004:c76391-75906 [Burkholderia cenocepacia] [TssE]
MKRFEPSFLDKLFDDEPHLPASAAMRQLSLDELKNTVARDVEAILNTRIAHTENELAALPECQKSVLTYGLNDFAGLSLA
SHYDRAFICKSIQQAIARHEPRLQQVQVTFELNEQATNALYFAIQALLVVHPAEEPVSFDAMLQPSTLQYSVTRARAARM
Q*

  Nucleotide sequence: 486 bp    

>T6CP015864 NZ_LAUA01000004:c76391-75906 [Burkholderia cenocepacia] [TssE]
ATGAAACGATTCGAACCCAGTTTTCTCGACAAGCTGTTCGACGACGAACCGCATCTGCCGGCCTCGGCCGCGATGCGGCA
ATTGTCGCTGGACGAGCTCAAGAACACGGTCGCCCGCGACGTCGAGGCGATCCTCAACACCCGTATCGCGCATACCGAGA
ACGAGCTGGCCGCGCTGCCGGAATGCCAGAAATCGGTGCTGACCTACGGGCTGAACGATTTCGCGGGGCTGAGCCTCGCG
AGCCACTACGACCGCGCATTCATCTGCAAGTCGATCCAGCAGGCCATCGCGCGCCACGAGCCGCGCCTGCAGCAGGTGCA
GGTGACGTTCGAGCTGAACGAGCAGGCCACCAACGCGCTGTACTTCGCGATCCAGGCGCTGCTCGTCGTGCACCCGGCCG
AGGAGCCGGTGAGTTTCGACGCGATGCTGCAACCGTCGACGCTGCAGTATTCGGTCACGCGCGCACGCGCGGCACGCATG
CAGTAA