Detailed information of component protein


Summary

Component ID T6CP015863
Component protein type TssF
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11805
Coordinate (Strand) 73994..75829 (-)
NCBI ID WP_006484396.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6R7_BURCJ
KEGG ID bcj:BCAL0345
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.9e-192 2..607
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MEELLPYYERELSFLRRYSRDFAERYPKIAARLALSGEHCEDPHVERMIESFALLGARINKKLDDDYPEFTEALLEVLYPHYLRPFPSCSIAQFTPASPGQQTEPVVIERGTELKSRPIRGVQCRFRTAYDVTLAPIRISEARYTPVALAPSATVLPSNATGVISITFESLAAQLDLGALKLSTLRAHLHGEQSFVAALTDCLFVNVLGAYVEPERNGRWTALRKLPIAQAGFAEDDALIDYPAKSHPAYRLLTEYFAFPDKFDFVDFDLAAIARASGRCQRATLHLVLQDVRSDSHVARLLELLMASHFRLFCTPIVNLFRQHGEPIRITHRAVSYPVIAEARRAFAYEVYSIDSVKLVRQQAHEESVIEFRPFYSLHHGEAARIGHYWFARRNDWVAQKSPGYETEISIVDIDFEPTSPQTDTLSLDLTCTNRDLPAMLAFGLEGGDLFQEGGAQTSGISLLRRPTQSVRFERGRAAHWRLVSHLALNHVSLVAHGLAPLKEMLTLYDLRRTAVSMRQIDGLVGVEQRGAVQWLPGKPFATFVRGIEIRLTIDEEHFVGASLASFVRVLDSFFGLYVHLNSFVQLVVVSKRTGEEIIRCKPRTGESILA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9927 - -


  Protein sequence: 612 a.a.    

>T6CP015863 NZ_LAUA01000004:c75829-73994 [Burkholderia cenocepacia] [TssF]
MEELLPYYERELSFLRRYSRDFAERYPKIAARLALSGEHCEDPHVERMIESFALLGARINKKLDDDYPEFTEALLEVLYP
HYLRPFPSCSIAQFTPASPGQQTEPVVIERGTELKSRPIRGVQCRFRTAYDVTLAPIRISEARYTPVALAPSATVLPSNA
TGVISITFESLAAQLDLGALKLSTLRAHLHGEQSFVAALTDCLFVNVLGAYVEPERNGRWTALRKLPIAQAGFAEDDALI
DYPAKSHPAYRLLTEYFAFPDKFDFVDFDLAAIARASGRCQRATLHLVLQDVRSDSHVARLLELLMASHFRLFCTPIVNL
FRQHGEPIRITHRAVSYPVIAEARRAFAYEVYSIDSVKLVRQQAHEESVIEFRPFYSLHHGEAARIGHYWFARRNDWVAQ
KSPGYETEISIVDIDFEPTSPQTDTLSLDLTCTNRDLPAMLAFGLEGGDLFQEGGAQTSGISLLRRPTQSVRFERGRAAH
WRLVSHLALNHVSLVAHGLAPLKEMLTLYDLRRTAVSMRQIDGLVGVEQRGAVQWLPGKPFATFVRGIEIRLTIDEEHFV
GASLASFVRVLDSFFGLYVHLNSFVQLVVVSKRTGEEIIRCKPRTGESILA*

  Nucleotide sequence: 1836 bp    

>T6CP015863 NZ_LAUA01000004:c75829-73994 [Burkholderia cenocepacia] [TssF]
ATGGAAGAATTGCTGCCGTATTACGAACGCGAATTATCGTTTTTGCGGCGCTATTCGCGAGATTTCGCCGAACGCTATCC
GAAGATCGCCGCGCGCCTCGCGCTGTCCGGCGAGCATTGCGAGGATCCGCACGTCGAGCGGATGATCGAGTCGTTCGCGC
TGCTCGGCGCGCGCATCAACAAGAAGCTCGACGACGACTACCCCGAATTCACCGAAGCGCTGCTGGAAGTGCTGTATCCG
CACTACCTGCGGCCGTTCCCGTCGTGTTCGATCGCGCAGTTCACGCCGGCTTCGCCCGGCCAGCAGACCGAACCGGTCGT
GATCGAGCGCGGCACCGAGCTGAAGAGCCGTCCGATCCGCGGCGTGCAATGCCGGTTCCGTACCGCCTACGACGTGACGC
TCGCGCCGATCCGCATCTCGGAAGCACGCTATACGCCGGTCGCGCTCGCGCCGAGCGCGACGGTGCTGCCGTCGAACGCG
ACGGGCGTGATCTCGATCACGTTCGAATCGCTCGCCGCGCAGCTCGATCTCGGCGCGCTGAAGCTGTCGACGCTGCGCGC
GCACCTGCACGGCGAGCAGTCGTTCGTCGCCGCGCTCACCGACTGCCTGTTCGTCAACGTGCTCGGCGCGTACGTCGAGC
CCGAACGCAACGGCCGCTGGACCGCGCTGCGCAAGCTGCCGATCGCGCAGGCCGGCTTCGCCGAGGACGACGCGCTGATC
GACTATCCGGCGAAATCGCATCCCGCATACCGGCTGCTCACCGAATACTTCGCGTTCCCCGACAAGTTCGATTTCGTCGA
CTTCGACCTCGCGGCGATCGCGCGCGCGTCGGGCCGCTGCCAGCGCGCGACGCTGCATCTGGTGCTGCAGGACGTGCGCA
GCGATTCGCACGTCGCGCGCCTGCTCGAATTGCTGATGGCGAGCCATTTCCGGCTGTTCTGCACGCCGATCGTGAACCTG
TTCCGCCAGCACGGCGAGCCGATCCGCATCACGCACCGCGCGGTGTCGTATCCGGTGATCGCCGAGGCGCGGCGCGCGTT
CGCGTACGAGGTGTACTCGATCGACTCGGTGAAGCTCGTCCGGCAGCAGGCGCACGAGGAATCGGTGATCGAGTTCCGGC
CGTTCTATTCGCTGCATCACGGCGAAGCGGCGCGGATCGGCCACTACTGGTTCGCGCGGCGCAACGACTGGGTCGCACAG
AAGAGCCCCGGCTACGAAACCGAGATCTCGATCGTCGACATCGACTTCGAGCCGACGTCGCCGCAGACCGACACGCTGAG
CCTCGATCTCACCTGCACGAACCGCGACCTGCCTGCCATGCTGGCGTTCGGCCTCGAAGGCGGCGACCTGTTCCAGGAAG
GCGGCGCGCAGACGAGCGGCATTTCGCTGCTGCGTCGCCCGACGCAGAGCGTGCGCTTCGAGCGCGGCCGCGCCGCGCAC
TGGCGGCTCGTGTCGCACCTCGCGCTCAACCACGTATCGCTCGTCGCGCACGGCCTCGCACCGCTGAAGGAAATGCTGAC
GCTGTACGACCTGCGACGCACGGCGGTGTCGATGCGCCAGATCGACGGCCTGGTCGGCGTCGAGCAGCGCGGCGCCGTGC
AGTGGCTGCCCGGCAAGCCGTTCGCGACCTTCGTGCGCGGCATCGAGATCCGGCTGACGATCGACGAGGAACACTTCGTC
GGCGCGAGCCTCGCGTCCTTCGTGCGCGTGCTCGACAGCTTCTTCGGGCTGTACGTCCACCTCAACAGTTTCGTTCAATT
GGTCGTCGTGTCGAAGCGCACCGGCGAGGAGATCATTCGATGCAAGCCCCGAACCGGCGAATCGATCCTGGCGTAG