Detailed information of component protein


Summary

Component ID T6CP015862
Component protein type TssG
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (367 a.a.); Nucleotide sequence (1101 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11800
Coordinate (Strand) 72930..74030 (-)
NCBI ID WP_006484394.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6R8_BURCJ, A0A1V6KPS4_9BURK
KEGG ID bcj:BCAL0346
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 6.1e-90 19..346
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-366 MQAPNRRIDPGVVDALLDEPHRFEFFQAVRVLEGLFARQASDAPGAWRQGDVVAQRIAFRNTLSLGFPPSEIEGARSFDDDGASLSSDEQRGAALAAGELGRVELTPAFFGLLGGQGALPLHYTEQIVAREHLRRDHAARAFFDVFSNRATALFYAAWKKYRLPFHYELDRDERYLPLLLAIAGVPSDEVRDSLAAGAGGVLDEAVAGYALAARHRPMSAAYLQRTLSDYFRVPVKIDQFVGKWYDVPPDQLSVLGEVNAVLGATALVGERVWQRDMRARIVVGPLSKRDYEAFLPGGAQAVALERMLTLLAGVTLEYEVKLVLKRTEVGASVLGAGSRLGWDAFLCTRDAAEDRSDARYELHVIH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9826 - -


  Protein sequence: 367 a.a.    

>T6CP015862 NZ_LAUA01000004:c74030-72930 [Burkholderia cenocepacia] [TssG]
MQAPNRRIDPGVVDALLDEPHRFEFFQAVRVLEGLFARQASDAPGAWRQGDVVAQRIAFRNTLSLGFPPSEIEGARSFDD
DGASLSSDEQRGAALAAGELGRVELTPAFFGLLGGQGALPLHYTEQIVAREHLRRDHAARAFFDVFSNRATALFYAAWKK
YRLPFHYELDRDERYLPLLLAIAGVPSDEVRDSLAAGAGGVLDEAVAGYALAARHRPMSAAYLQRTLSDYFRVPVKIDQF
VGKWYDVPPDQLSVLGEVNAVLGATALVGERVWQRDMRARIVVGPLSKRDYEAFLPGGAQAVALERMLTLLAGVTLEYEV
KLVLKRTEVGASVLGAGSRLGWDAFLCTRDAAEDRSDARYELHVIH*

  Nucleotide sequence: 1101 bp    

>T6CP015862 NZ_LAUA01000004:c74030-72930 [Burkholderia cenocepacia] [TssG]
ATGCAAGCCCCGAACCGGCGAATCGATCCTGGCGTAGTCGACGCGCTGCTCGACGAGCCGCACCGCTTCGAGTTCTTCCA
GGCGGTGCGCGTGCTCGAGGGGCTGTTCGCGCGGCAGGCGTCGGATGCGCCCGGCGCATGGCGGCAGGGCGACGTGGTCG
CGCAGCGCATCGCATTCCGCAACACGCTGTCGCTCGGCTTTCCGCCGAGCGAGATCGAAGGCGCGCGCTCGTTCGACGAC
GACGGCGCGTCGCTGAGTTCGGACGAGCAGCGCGGCGCCGCGCTGGCCGCCGGCGAGCTCGGCCGCGTCGAGCTGACGCC
CGCGTTCTTCGGGCTGCTCGGCGGGCAAGGCGCGCTGCCGCTGCACTACACCGAGCAGATCGTCGCGCGCGAGCATCTGC
GGCGCGACCATGCGGCGCGCGCGTTCTTCGACGTGTTCTCGAACCGCGCGACCGCGCTGTTCTACGCGGCGTGGAAGAAA
TACCGGCTGCCGTTCCACTACGAGCTCGACCGCGACGAGCGCTACCTGCCGCTGTTGCTCGCGATCGCGGGCGTGCCGAG
CGACGAGGTGCGCGACAGCCTCGCGGCCGGCGCGGGCGGTGTGCTCGACGAGGCCGTGGCCGGCTACGCGCTCGCCGCGC
GGCACCGGCCGATGTCGGCCGCCTACCTGCAGCGCACGCTGTCCGATTACTTCCGCGTGCCGGTGAAGATCGACCAGTTC
GTCGGCAAGTGGTACGACGTGCCGCCCGATCAGCTGAGCGTGCTCGGTGAAGTCAACGCGGTGCTCGGCGCGACGGCGCT
CGTCGGCGAGCGCGTGTGGCAGCGCGACATGCGCGCGCGAATCGTCGTCGGCCCGCTGTCCAAGCGCGACTACGAGGCGT
TCCTGCCCGGCGGCGCGCAGGCCGTCGCGCTCGAGCGGATGCTGACGCTGCTCGCCGGCGTCACGCTCGAATACGAGGTG
AAGCTCGTGCTGAAGCGCACCGAGGTCGGCGCGAGCGTGCTCGGCGCGGGCTCGCGGCTCGGCTGGGATGCGTTCCTGTG
CACGCGCGACGCGGCCGAGGACCGTTCGGACGCCCGCTACGAACTGCACGTGATTCACTGA