Detailed information of component protein


Summary

Component ID T6CP015861
Component protein type TssH
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (890 a.a.); Nucleotide sequence (2670 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11795
Coordinate (Strand) 70219..72888 (-)
NCBI ID WP_006484392.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6R9_BURCJ
KEGG ID bcj:BCAL0347
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 9.1e-43 619..787
AAA_lid_9 PF17871.3 4.5e-28 374..463
ClpB_D2-small PF10431.11 8.6e-10 794..868
AAA PF00004.31 1.7e-09 232..344
Clp_N PF02861.22 2.7e-08 23..74
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-889 MSTPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALHADLERELTRLKTGNTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSSRFAEMNVTDLKHKFDEIMAGSSEAEPRQTDDEGSDVAPAADGMAPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVGKTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAITEAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPAAIDDTKKRIERIDAEIASLEREVAGGAAHDERLGELRGARDTALEQLAKDEERYEAERVIVAEITELRDALDRARGPSEDGQPVDVQATRDKLAERVAALHALQGSEPMVPLQVDGHVVAEIVAAWTGIPLGRMVKDEIDTVLNLQPLLSARVIGQDHALEAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALADILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGTMDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDTLAETLRPQLYKTFKPAFLGRMKVVPYYPISDDVLAEIIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADEAGEFAYTVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9935 - -


  Protein sequence: 890 a.a.    

>T6CP015861 NZ_LAUA01000004:c72888-70219 [Burkholderia cenocepacia] [TssH]
MSTPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALHADLERELTRLKTG
NTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSSRFAEMNVTDLKHKFDEIMAGSSEAE
PRQTDDEGSDVAPAADGMAPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPAAIDDTKKRIERIDAEIASLEREVAGGAAHDERLGELRGARD
TALEQLAKDEERYEAERVIVAEITELRDALDRARGPSEDGQPVDVQATRDKLAERVAALHALQGSEPMVPLQVDGHVVAE
IVAAWTGIPLGRMVKDEIDTVLNLQPLLSARVIGQDHALEAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL
ADILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGT
MDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDTLAETLRPQLYKTFKPAFLGRMKVVPYYPISDDVLAE
IIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADE
AGEFAYTVE*

  Nucleotide sequence: 2670 bp    

>T6CP015861 NZ_LAUA01000004:c72888-70219 [Burkholderia cenocepacia] [TssH]
ATGAGCACGCCTCTGAAGACCCTGATCACGAAACTGAACCCGCTGTGCCGCCACGCGACCGAGCGGGCGGCGAGCGCGTG
CCTGGCGCGCGGCCACTACGAGGTCGATCTGGAACACCTGTTCCTCGCGTTGCTCGACGAGGCGACGGGCGACCTGCCGC
TCGCGTTGCGCGCGAGCCGCGTCGATCCGCATGCGCTGCACGCCGATCTCGAACGCGAGCTCACGCGCCTGAAGACCGGC
AACACGCGCACGCCGGTGTTCTCCGTGCACCTGATCGCGCTGTTCGAGCAAGCATGGCTGATCGCGTCGCTCGATTCGCA
GCTCGGCCGCATCCGGTCGGGGCACCTGCTGCTCGCGCTGCTGACCGCGCCGGATCTCGCGCAGTTCGCGCAACGGATGT
CGTCGCGCTTCGCGGAAATGAACGTGACGGACCTGAAGCACAAGTTCGACGAAATCATGGCCGGTTCGAGCGAAGCCGAG
CCGCGCCAGACGGACGACGAGGGCAGCGACGTCGCGCCCGCCGCCGACGGCATGGCACCCGCGGCCGGCCCGTCGAAGAC
GCCCGCGCTCGACACGTACACGACCAACCTCACGCAGCGCGCCCGCGACGGCAAGATCGATCCGGTGATCGGCCGCGAAG
CGGAGATCCGCCAGGCGATCGACATCCTGATGCGCCGTCGCCAGAACAACCCGATCATGACCGGCGAGGCCGGCGTCGGC
AAAACGGCGGTCGTCGAAGGGCTCGCGCTGCGGATCGCGGCCGACGACGTGCCGCCGCCGTTGCGCGGCGTCGCGCTGCA
CGTGCTCGACATGGGGCTGCTGCAGGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGGCTGAAGAGCGTGATCGACG
AGGTGAAGAAGAGCGCGCATCCGATCATCCTGTTCATCGACGAGGCGCACACGATCATCGGCGCGGGCGGCCAGGCCGGC
CAGAACGACGCGGCGAACCTGCTGAAGCCGGCGCTCGCGCGCGGCGAGCTGCGCACGATCGCCGCGACGACGTGGAGCGA
ATACAAGAAGTATTTCGAGAAGGATGCGGCGCTCGCGCGGCGCTTCCAGGTCGTGAAGGTCGAGGAGCCGAGCGAGCCGC
TCGCGGCCGCGATGCTGCGCGGGATGTCGGGCCTGATGGAGAAGCACTTCAACGTGCGGATCCTCGACGATGCGATCACC
GAGGCCGTGCGCCTGTCGCATCGCTACATCAGCGGCCGTCAGCTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCCTG
CGCGAAGGTCGCGCTCGCGCACAGCGCGACACCGGCGGCGATCGACGACACCAAGAAGCGCATCGAGCGCATCGATGCGG
AAATCGCGTCGCTCGAGCGCGAGGTGGCGGGCGGCGCGGCGCACGACGAGCGGCTCGGCGAGCTGCGCGGCGCGCGCGAC
ACGGCGCTCGAACAACTGGCAAAGGACGAGGAACGCTACGAAGCCGAGCGCGTGATCGTCGCCGAGATCACCGAGCTGCG
CGATGCGCTCGACCGCGCACGCGGCCCGTCGGAAGACGGCCAGCCGGTCGACGTGCAGGCCACCCGCGACAAGCTCGCGG
AGCGCGTCGCGGCGCTGCACGCGCTGCAAGGGAGCGAGCCGATGGTGCCGCTGCAGGTCGACGGCCACGTGGTCGCCGAG
ATCGTCGCCGCGTGGACCGGCATTCCGCTCGGCCGGATGGTGAAGGACGAGATCGACACCGTGCTGAACCTGCAGCCGCT
GCTGAGCGCGCGCGTGATCGGCCAGGACCATGCGCTGGAGGCGATCGCGCAGCGCGTGCGCACCGCGACCGCGAACCTCG
AGGATCCGAACAAGCCGCGCGGCGTGTTCATGTTCGTCGGGCCGTCGGGCGTCGGCAAGACCGAGACGGCGCTGGCGCTG
GCCGACATCCTGTACGGCGGCGAGCGCAAGATGGTCACGATCAACATGAGCGAGTACCAGGAAGCGCACAGCGTGTCGGG
CCTGAAGGGCTCGCCGCCGGGCTACGTCGGGTACGGCGAAGGCGGCGTGCTGACCGAGGCCGTGCGCCGCAACCCGTATT
CCGTCGTGCTGCTCGACGAAGTCGAGAAGGCGCACCCCGACGTGCTCGAAATGTTCTTCCAGGTGTTCGACAAGGGCACG
ATGGACGATGCGGAAGGGCGCGAGATCGACTTTCGCAACACGCTGATCATCCTGACCTCGAACGTCGGCTCGGCCGCGGT
GATGCAGGCGTGCCTGAACAAGCCGGCCGAGGAACTGCCCGACCCGGACACGCTCGCCGAGACGCTGCGTCCGCAGTTGT
ACAAGACCTTCAAGCCGGCGTTCCTCGGCCGGATGAAGGTCGTGCCGTACTACCCGATTTCCGACGACGTGCTGGCCGAG
ATCATCGAGCTGAAGCTCGAACGCATCCGCCGCCGGATCGAAGCGAACCACAAGGCCGCGTTCGAGTGGGACGAGTCGCT
CGTCGACGCGGTGCTCGCGCGCTGCACCGAGGTCGATTCGGGCGCCCGCAACGTCGACCACATCCTGAACGGCACGCTGC
TGCCGGAGATCGCGGGCCACGTGCTGGGCCGGATCGCCGACGGCGCGGCCATCGCGCGCATCGCGGTGCGCGCGGACGAG
GCCGGCGAATTCGCGTACACCGTCGAATGA