Detailed information of component protein


Summary

Component ID T6CP015860
Component protein type TssA
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (374 a.a.); Nucleotide sequence (1122 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11790
Coordinate (Strand) 69053..70174 (-)
NCBI ID WP_006484398.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6S0_BURCJ, A0A1V6KP57_9BURK
KEGG ID bcj:BCAL0348
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2.3e-36 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-373 MPINLPELLTPISEASPSGDDLLFSNEFDAIQDARRYDDPTLDQGEWVTEIKEADWGFVVDHAGELLRTRTKDLRLAVWLTEALALEDGITGLTEGYALLEGLCREFWDTFHPLPEDDDIEHRLGNVAWLSGRTAELLRAVPLTDGASNAFSTLDWEVAQHVAQSIKRDPEHADDIARGKPSIEQIDASRRVTSIAFYTALLANLKAFEFALDAFEERLVERAGDSAPSFRQARDAFETVYRLAERFAREQGYTGSAPHTQAVQQAQPERIEPVFGQPIQTEETHVQQQTASRPPVTQTIAGIQNRAQAVDQLRAVARYFRQTEPHSPVAYLADKAAEWADMPLHKWLESVVKDDGSLSHIRELLGVRPDEQS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9718 - -


  Protein sequence: 374 a.a.    

>T6CP015860 NZ_LAUA01000004:c70174-69053 [Burkholderia cenocepacia] [TssA]
MPINLPELLTPISEASPSGDDLLFSNEFDAIQDARRYDDPTLDQGEWVTEIKEADWGFVVDHAGELLRTRTKDLRLAVWL
TEALALEDGITGLTEGYALLEGLCREFWDTFHPLPEDDDIEHRLGNVAWLSGRTAELLRAVPLTDGASNAFSTLDWEVAQ
HVAQSIKRDPEHADDIARGKPSIEQIDASRRVTSIAFYTALLANLKAFEFALDAFEERLVERAGDSAPSFRQARDAFETV
YRLAERFAREQGYTGSAPHTQAVQQAQPERIEPVFGQPIQTEETHVQQQTASRPPVTQTIAGIQNRAQAVDQLRAVARYF
RQTEPHSPVAYLADKAAEWADMPLHKWLESVVKDDGSLSHIRELLGVRPDEQS*

  Nucleotide sequence: 1122 bp    

>T6CP015860 NZ_LAUA01000004:c70174-69053 [Burkholderia cenocepacia] [TssA]
ATGCCGATCAATCTCCCCGAGCTGCTGACGCCGATCAGCGAGGCGTCGCCCAGCGGCGACGACCTGCTGTTCTCGAACGA
ATTCGACGCGATCCAGGACGCGCGGCGCTACGACGACCCGACGCTCGACCAGGGCGAATGGGTGACCGAGATCAAGGAGG
CCGACTGGGGCTTCGTCGTCGACCATGCGGGCGAGCTGCTGCGCACGCGCACGAAGGACCTGCGGCTCGCCGTGTGGCTG
ACCGAGGCGCTCGCGCTCGAGGACGGCATCACCGGCCTCACCGAAGGCTATGCGCTGCTCGAGGGTCTGTGCCGCGAGTT
CTGGGACACCTTCCACCCGCTGCCCGAGGACGACGACATCGAGCACCGGCTCGGCAACGTCGCATGGCTGTCCGGTCGCA
CGGCCGAGCTGCTGCGCGCGGTGCCGCTGACCGACGGTGCATCGAATGCGTTCAGCACGCTCGACTGGGAAGTCGCGCAG
CACGTCGCGCAGTCGATCAAGCGCGACCCCGAGCATGCGGACGACATCGCGCGCGGCAAGCCGTCGATCGAGCAGATCGA
CGCGTCGCGGCGCGTGACGTCGATCGCGTTCTACACGGCGCTGCTGGCGAACCTGAAGGCGTTCGAATTCGCGCTCGATG
CGTTCGAGGAGCGGCTCGTCGAGCGCGCGGGCGATTCGGCGCCGAGCTTCCGGCAGGCGCGCGACGCGTTCGAGACCGTG
TACCGGCTCGCCGAGCGCTTCGCGCGCGAACAGGGCTATACCGGCAGCGCGCCGCACACGCAGGCGGTGCAGCAGGCCCA
GCCCGAGCGCATCGAGCCGGTGTTCGGCCAACCGATCCAGACCGAGGAGACCCACGTGCAGCAGCAGACCGCTTCGCGTC
CTCCGGTGACGCAGACGATCGCCGGCATCCAGAACCGTGCGCAGGCCGTCGACCAGTTGCGTGCGGTGGCGCGCTATTTC
CGTCAGACCGAGCCGCACAGCCCAGTCGCGTATCTCGCCGACAAAGCGGCCGAATGGGCCGACATGCCGCTGCACAAGTG
GCTCGAGAGCGTCGTGAAGGACGACGGCTCGCTGTCGCATATTCGCGAACTGCTGGGCGTGCGGCCCGACGAGCAGTCGT
AA