Detailed information of component protein


Summary

Component ID T6CP015859
Component protein type TagF
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (330 a.a.); Nucleotide sequence (990 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11780
Coordinate (Strand) 67015..68004 (+)
NCBI ID WP_006483243.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6S2_BURCJ, A0A364GT21_9BURK, A0A107KWM6_9BURK
KEGG ID bcj:BCAL0350
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 2.2e-26 10..139
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-329 MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQALELLAEDPRWKIVYEDAKPMHFAFLGSRSKLAIAGHMVASHDVSMRRFPFLGATALEVDRPVAFLARSPLAFARLWSRVAAQIPPLLGKDEPPGALQALGDTQVPIDIGGPGTSHDGTFNDFVEHQTLHGLQEMLLESGHPVRLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWLELIAPFVAQADFELAIFIGTIAERERLVIGFNGASAKTLLSVVDPQTYAAHNIDIDDPEWIDAHAQNDHQISKLVSYLDQPQLSLRVAIDAFREAFIGG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9949 - -


  Protein sequence: 330 a.a.    

>T6CP015859 NZ_LAUA01000004:67015-68004 [Burkholderia cenocepacia] [TagF]
MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQALELLAEDPRWKIVYEDAKPMHFAFLGSRSKLAIAGHMVA
SHDVSMRRFPFLGATALEVDRPVAFLARSPLAFARLWSRVAAQIPPLLGKDEPPGALQALGDTQVPIDIGGPGTSHDGTF
NDFVEHQTLHGLQEMLLESGHPVRLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWLELIAPFVAQA
DFELAIFIGTIAERERLVIGFNGASAKTLLSVVDPQTYAAHNIDIDDPEWIDAHAQNDHQISKLVSYLDQPQLSLRVAID
AFREAFIGG*

  Nucleotide sequence: 990 bp    

>T6CP015859 NZ_LAUA01000004:67015-68004 [Burkholderia cenocepacia] [TagF]
ATGACGCAAACCGTACAGGCGCAAATCGCCTACTTCGGCAAGATTCCGTCGCGCGGCGACTTCGTGAAGAGCGCGCACAA
TCCGCAACTGCTGCAGACGCTCGATCGCTGGATCGCGCAGGCGCTGGAGCTGCTCGCGGAAGATCCGCGCTGGAAGATCG
TCTACGAGGATGCGAAGCCGATGCATTTCGCGTTTCTCGGCTCGCGCAGCAAGCTCGCGATCGCGGGCCACATGGTCGCG
AGCCACGACGTGTCGATGCGCCGCTTCCCGTTCCTCGGCGCCACCGCGCTGGAGGTCGACCGGCCGGTCGCCTTCCTCGC
GCGCAGCCCGCTCGCGTTCGCGCGGCTGTGGTCGCGCGTCGCCGCGCAGATCCCGCCGCTGCTCGGCAAGGACGAGCCGC
CCGGCGCGCTGCAAGCGCTCGGCGACACGCAGGTGCCGATCGACATCGGCGGCCCCGGCACGTCGCATGACGGCACCTTC
AACGATTTCGTCGAACACCAGACGCTGCACGGCCTGCAGGAGATGCTGCTCGAAAGCGGTCATCCGGTGCGGCTGCGCGG
CGCGATGCTCGCGCTCGGCTCGCTGCTGCGGCCGGTGATGCAGAGCGGTTCGTCGCACATCGAACGCGGCCTCACGCTGC
CGCTGCCGGTCGATCCGTTCTACCGCAGCCTCGTCGCCGCGTTCTGGCTCGAGCTGATCGCGCCGTTCGTCGCGCAGGCC
GACTTCGAGCTCGCGATCTTCATCGGCACGATCGCCGAACGCGAACGGCTCGTCATTGGCTTCAACGGCGCGTCGGCGAA
GACGCTGCTGAGCGTCGTCGACCCGCAGACCTACGCCGCCCACAACATCGACATCGACGATCCCGAGTGGATCGACGCCC
ATGCGCAAAACGATCACCAGATCAGCAAGCTCGTCAGCTACCTCGACCAACCGCAACTCTCGCTGCGCGTCGCCATCGAC
GCGTTCCGCGAAGCGTTCATCGGAGGCTGA