Detailed information of component protein


Summary

Component ID T6CP015858
Component protein type TssM
T6SS ID (Type) T6SS01276 experimental (Type i4b)
Strain Burkholderia cenocepacia strain K56-2
Replicon chromosome
Sequence Protein sequence (1315 a.a.); Nucleotide sequence (3945 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) WQ49_RS11775
Coordinate (Strand) 63074..67018 (+)
NCBI ID WP_012492310.1
RefSeq NZ_LAUA01000004
Uniprot ID B4E6S3_BURCJ
KEGG ID bcj:BCAL0351
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2e-95 498..877
IcmF-related_N PF14331.8 9e-83 194..447
IcmF_C PF06744.14 7.2e-22 1147..1250
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MQRILNVLTHPR
Transmembrane helix 13-30 TLSIVGIVALAAILFIVA
Outside 31-34 DMLQ
Transmembrane helix 35-57 LPLLWAATAFAAILALWLVVALW
Inside 58-443 RRWRVKRANQQLGQVLEEQAETGKIAAPAAAALAPDAKTADLDVLRTRLSDAVKTIKTSKIGQVSGGSALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKNSAVIHGIGGTRNCDWFFTTEGILLDTAGRYSVHEEDRSEWLGFLGLLKRYRPKAPINGIIVTASIAELTGNRPEFAINLAKNLRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSSSDKHEYDRVWGATLPYEPDDKRDVVAQFDTHFEELYEGLKEISVAQLSLSRGNQLSPGQLSFPLEFSTIKPSLRAFLATLFENNPFQYKPIFRGFYFTSALQEGETNSAAAQRIAHRFGLDGNALPKPHSAFSKNGFFLRDLFSKVIFADRQTVRQFASPTKTR
Transmembrane helix 444-466 LRYATFFGFVAALALALGGWTWS
Outside 467-1314 TIGNQQLVANVQADLDNVTRLQQGRNDLQSRLQAMDILEDRIEQLEQFRRDKPMSVSLGLYQGDRLEQHLLTEYYNGVRQILLAPVSQNLASFMKDVNAHPEQLVPMTRPPESGAVPGGTIPVSTNAAGAAPQAGAALAASGTAPATAPQQAAAPQGGLYSDASPTNVQDAYNALKTYLMLSDKRHVEQAHLTDQLARFWRGWLETNRGNMPRDEMIRSAERMISFYLSRVNDNDWPMIDANLALVDQTRENLRRVVRGMPARQRVYEEIKARASTRFAPMTIARIVGDGNQGLVAGSYAIPGTFTREAWFDYVQPAIRDAATKELQAKDWVLNTSTQDDLTLEGSPEQIQKTLVGMYKTEYAQHWQKFMQGIAVQGFTSFGQAVDGMNRLGDPQDSPIRKILETAYDQTSWDNPSLANVTIKKAQTGVVNWVKQLFSRSQAGQVAAANIDINGNPAEVPMGPIGQEFVGLARIVATHDGTSMLKGYMESLSKVRTRFNVIKNQGDPGPGARQLMQQTLDGSGSELADSLKLVDEQMLTGLTDSQRKSLRPLLVRPLMQAFAVVIQPASAEVNKVWNAQVYQPFQSSLATKYPFAANAKVEAGAGEIAQVFGPDGSIAKFVGTTLGPLAVRRGDTLAARTWGDMGIGLTPDFTNGFARWVAPLAGGAAGSAAASAEPQTVFQILPQPSTGTTEYTIAIDGQQLRYRNTPPQWTNFVWPNPQGSPGATLSATTFDGRTVQLVNEPGRYGLEKLINSAQRKRRPDGTFDLTWAQGSVNVSVTMRIISTSQPSAGGGDQPQQQSLRGLQLPSSVADASAGAAQNATQAGTGTPGAAPAVAAANATNAQRAQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9979 - -


  Protein sequence: 1315 a.a.    

>T6CP015858 NZ_LAUA01000004:63074-67018 [Burkholderia cenocepacia] [TssM]
MQRILNVLTHPRTLSIVGIVALAAILFIVADMLQLPLLWAATAFAAILALWLVVALWRRWRVKRANQQLGQVLEEQAETG
KIAAPAAAALAPDAKTADLDVLRTRLSDAVKTIKTSKIGQVSGGSALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKN
SAVIHGIGGTRNCDWFFTTEGILLDTAGRYSVHEEDRSEWLGFLGLLKRYRPKAPINGIIVTASIAELTGNRPEFAINLA
KNLRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSSSDKHEYDRVWGATLPYEPDDKRDVVAQFDTHFEELYEGLKE
ISVAQLSLSRGNQLSPGQLSFPLEFSTIKPSLRAFLATLFENNPFQYKPIFRGFYFTSALQEGETNSAAAQRIAHRFGLD
GNALPKPHSAFSKNGFFLRDLFSKVIFADRQTVRQFASPTKTRLRYATFFGFVAALALALGGWTWSTIGNQQLVANVQAD
LDNVTRLQQGRNDLQSRLQAMDILEDRIEQLEQFRRDKPMSVSLGLYQGDRLEQHLLTEYYNGVRQILLAPVSQNLASFM
KDVNAHPEQLVPMTRPPESGAVPGGTIPVSTNAAGAAPQAGAALAASGTAPATAPQQAAAPQGGLYSDASPTNVQDAYNA
LKTYLMLSDKRHVEQAHLTDQLARFWRGWLETNRGNMPRDEMIRSAERMISFYLSRVNDNDWPMIDANLALVDQTRENLR
RVVRGMPARQRVYEEIKARASTRFAPMTIARIVGDGNQGLVAGSYAIPGTFTREAWFDYVQPAIRDAATKELQAKDWVLN
TSTQDDLTLEGSPEQIQKTLVGMYKTEYAQHWQKFMQGIAVQGFTSFGQAVDGMNRLGDPQDSPIRKILETAYDQTSWDN
PSLANVTIKKAQTGVVNWVKQLFSRSQAGQVAAANIDINGNPAEVPMGPIGQEFVGLARIVATHDGTSMLKGYMESLSKV
RTRFNVIKNQGDPGPGARQLMQQTLDGSGSELADSLKLVDEQMLTGLTDSQRKSLRPLLVRPLMQAFAVVIQPASAEVNK
VWNAQVYQPFQSSLATKYPFAANAKVEAGAGEIAQVFGPDGSIAKFVGTTLGPLAVRRGDTLAARTWGDMGIGLTPDFTN
GFARWVAPLAGGAAGSAAASAEPQTVFQILPQPSTGTTEYTIAIDGQQLRYRNTPPQWTNFVWPNPQGSPGATLSATTFD
GRTVQLVNEPGRYGLEKLINSAQRKRRPDGTFDLTWAQGSVNVSVTMRIISTSQPSAGGGDQPQQQSLRGLQLPSSVADA
SAGAAQNATQAGTGTPGAAPAVAAANATNAQRAQ*

  Nucleotide sequence: 3945 bp    

>T6CP015858 NZ_LAUA01000004:63074-67018 [Burkholderia cenocepacia] [TssM]
ATGCAACGCATCCTCAACGTGCTGACTCATCCGCGTACGCTCTCGATCGTCGGGATCGTCGCGCTAGCGGCCATTCTGTT
CATCGTCGCCGACATGTTGCAGCTGCCGCTCCTGTGGGCGGCGACCGCGTTCGCGGCGATCCTCGCGCTGTGGCTCGTGG
TCGCGCTGTGGCGCCGCTGGCGCGTGAAGCGTGCGAACCAGCAGCTCGGCCAGGTGCTGGAAGAGCAGGCGGAAACCGGC
AAAATCGCCGCGCCGGCCGCTGCCGCGCTCGCACCGGACGCGAAGACGGCCGACCTCGACGTGCTGCGCACGCGCCTGTC
GGATGCGGTGAAGACGATCAAGACGTCGAAGATCGGCCAGGTGTCGGGCGGCTCCGCGCTGTACGAACTGCCGTGGTACA
TCGTGATCGGCAACCCGGCCGCGGGCAAGAGCAGCGCCGTGCTCAATTCCGGCCTGCAGTTCCCGTTCGCGGACAAGAAC
AGCGCCGTGATCCACGGCATCGGCGGCACGCGTAACTGCGACTGGTTCTTCACGACCGAAGGGATCCTGCTCGACACGGC
CGGCCGCTATTCGGTGCACGAGGAAGACCGCAGCGAATGGCTCGGCTTCCTCGGGCTGCTCAAGCGCTACCGTCCGAAGG
CGCCGATCAACGGCATCATCGTCACGGCCAGCATCGCCGAACTCACCGGCAATCGCCCCGAATTCGCGATCAACCTCGCG
AAGAACCTCCGTCAGCGCGTTCAGGAGCTGACGGAAAAGCTGGAAGTGTTCGCGCCGGTCTACGTGATGTTCACGAAGGC
CGACCTGATCACCGGCTTCACCGAATTCTTCAGCAGCAGCGACAAGCACGAGTACGACCGCGTGTGGGGCGCCACCCTGC
CCTACGAGCCCGACGACAAGCGCGACGTCGTCGCGCAGTTCGACACGCACTTCGAGGAACTCTACGAAGGGCTGAAGGAA
ATCAGCGTCGCGCAGCTGTCGCTGTCGCGCGGCAACCAGCTGTCGCCGGGCCAGTTGAGCTTCCCGCTCGAATTCTCGAC
GATCAAGCCGTCGCTGCGCGCGTTCCTCGCGACGCTGTTCGAGAACAACCCGTTCCAGTACAAGCCGATCTTCCGCGGCT
TCTACTTCACCAGCGCGCTGCAGGAAGGCGAAACCAACAGCGCGGCCGCGCAGCGCATCGCGCACCGCTTCGGCCTCGAC
GGGAATGCGCTGCCGAAACCGCACAGCGCGTTCTCGAAGAACGGCTTCTTCCTGCGCGACCTGTTCTCGAAGGTGATCTT
CGCGGACCGCCAGACGGTGCGCCAGTTCGCGAGCCCGACCAAGACGCGGCTGCGCTACGCGACCTTCTTCGGCTTCGTCG
CGGCGCTCGCGCTCGCGCTGGGCGGCTGGACCTGGTCGACGATCGGCAACCAGCAGCTGGTCGCGAACGTGCAGGCCGAC
CTCGACAACGTCACGCGCCTGCAGCAGGGCCGCAACGACCTGCAGTCGCGCCTGCAGGCGATGGACATCCTCGAGGACCG
GATCGAGCAGCTCGAACAGTTCCGCCGCGACAAGCCGATGTCGGTGTCGCTCGGCCTGTACCAGGGCGACCGGCTCGAGC
AGCATCTGCTGACCGAGTACTACAACGGCGTGCGCCAGATCCTGCTCGCGCCGGTCTCGCAAAACCTCGCGTCGTTCATG
AAAGACGTGAACGCGCACCCCGAGCAGCTCGTGCCGATGACGCGCCCGCCCGAATCGGGCGCCGTGCCGGGCGGCACGAT
ACCGGTCTCGACGAACGCGGCAGGCGCCGCCCCGCAGGCGGGCGCCGCGCTGGCCGCGTCCGGCACCGCGCCGGCCACCG
CGCCGCAACAGGCGGCGGCCCCGCAAGGCGGCCTCTACAGCGACGCGTCGCCAACCAACGTGCAGGATGCGTACAACGCG
CTCAAGACGTACCTGATGCTGTCCGACAAGCGTCACGTCGAACAGGCGCACCTGACCGATCAACTCGCCCGCTTCTGGCG
CGGCTGGCTCGAGACGAATCGCGGCAACATGCCGCGCGACGAGATGATCCGGAGCGCCGAGCGGATGATCTCGTTCTACC
TGTCCCGCGTGAACGACAACGACTGGCCGATGATCGACGCGAACCTCGCGCTCGTCGACCAGACCCGCGAGAACCTGCGC
CGCGTGGTGCGCGGCATGCCGGCCCGCCAGCGCGTCTACGAGGAAATCAAGGCCCGCGCGTCGACCCGCTTCGCGCCGAT
GACCATCGCGCGCATCGTCGGCGACGGCAACCAGGGGCTCGTGGCAGGCAGCTACGCGATTCCGGGCACGTTCACGCGTG
AAGCGTGGTTCGACTACGTGCAGCCGGCGATCCGCGATGCGGCGACCAAGGAGCTGCAGGCGAAGGACTGGGTGCTCAAC
ACGTCGACGCAGGACGACCTGACGCTCGAGGGCAGCCCCGAGCAGATCCAGAAGACGCTCGTCGGCATGTACAAGACCGA
GTACGCGCAGCACTGGCAGAAGTTCATGCAGGGCATCGCGGTACAGGGCTTCACCAGCTTCGGCCAGGCCGTCGACGGGA
TGAACCGCCTCGGCGACCCGCAGGATTCGCCGATCCGCAAGATCCTCGAGACCGCGTACGACCAGACGTCGTGGGACAAC
CCGTCGCTCGCGAACGTGACAATCAAGAAGGCGCAGACGGGCGTCGTGAACTGGGTCAAGCAGCTGTTCTCGCGCTCGCA
GGCCGGCCAGGTGGCGGCAGCCAACATCGACATCAACGGCAATCCGGCCGAGGTGCCGATGGGTCCGATCGGCCAGGAGT
TCGTCGGGCTCGCGCGGATCGTCGCGACGCACGACGGCACGTCGATGCTGAAGGGCTACATGGAGTCGCTGTCGAAGGTC
CGCACGCGCTTCAACGTGATCAAGAACCAGGGCGACCCGGGGCCGGGCGCGCGCCAGCTGATGCAGCAGACGCTCGACGG
CAGCGGTTCGGAACTTGCCGATTCGCTGAAGCTCGTCGACGAGCAGATGCTGACGGGCCTGACCGATTCGCAACGCAAGT
CGCTGCGTCCGCTGCTGGTGCGGCCGCTGATGCAGGCGTTCGCGGTCGTGATCCAGCCGGCCAGCGCCGAAGTCAACAAG
GTGTGGAACGCGCAGGTCTACCAGCCGTTCCAGAGCTCGCTCGCGACGAAGTACCCGTTCGCCGCGAACGCGAAGGTCGA
GGCCGGCGCCGGCGAGATCGCGCAGGTGTTCGGTCCGGACGGCTCGATCGCGAAGTTCGTCGGGACGACGCTCGGGCCGC
TCGCGGTGCGCCGCGGCGACACGCTCGCCGCCCGCACGTGGGGCGACATGGGCATCGGACTCACGCCGGACTTCACCAAC
GGCTTCGCCCGCTGGGTCGCGCCGCTCGCGGGCGGCGCGGCCGGCAGCGCAGCCGCGTCGGCCGAGCCGCAGACCGTGTT
CCAGATCCTGCCGCAACCGAGCACGGGCACGACGGAATACACGATCGCGATCGACGGCCAGCAGCTGCGCTACCGCAACA
CGCCGCCGCAGTGGACCAACTTCGTGTGGCCGAACCCGCAGGGTTCGCCGGGCGCGACGCTGTCCGCGACGACCTTCGAC
GGCCGCACGGTGCAGCTCGTCAACGAGCCGGGCCGCTACGGTCTCGAGAAGCTGATCAACTCGGCGCAGCGCAAGCGCCG
TCCGGATGGCACCTTCGACCTGACGTGGGCACAGGGCAGCGTGAACGTGTCGGTGACGATGCGCATCATCAGCACGTCGC
AACCGTCGGCCGGTGGCGGCGACCAGCCGCAGCAGCAAAGCCTGCGCGGCCTGCAGCTGCCGTCGTCGGTCGCCGACGCG
AGCGCGGGCGCCGCGCAGAACGCGACGCAAGCCGGCACCGGCACGCCGGGCGCCGCGCCGGCGGTCGCGGCCGCCAACGC
AACGAATGCACAGAGGGCGCAATGA