Detailed information of component protein


Summary

Component ID T6CP015850
Component protein type TagF
T6SS ID (Type) T6SS01275 experimental (Type i4b)
Strain Acinetobacter baumannii DSM 30011
Replicon chromosome
Sequence Protein sequence (320 a.a.); Nucleotide sequence (960 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) DSM30011_RS11560
Coordinate (Strand) 543931..544890 (-)
NCBI ID 446479387
RefSeq NZ_JJOC02000004
Uniprot ID A0A0J0ZXB4_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 1.6e-16 10..108
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-319 MHTLKTTPLYYGKSPARGDFLKTKGQYALIQVLDQWITEALEYAMQSNMFKEAYSKLPSLDFFIANPQENMFLAANLLASEDSSGRAFPMVLSHLLEIDLPYENLLYAPYSYKHVLVDLFQNNRALRGIKDSDLLFGKLNHLPNQIQVLSERECVGFYENHTMHSFAQLMKLSIYELAQSMIGLGLLLQPILQNGTSRLNKVLILPINNPAYCYEIAAFWVSIICRFLKQHNTEVLIGLLHREQPVLFFGFQGADILALSDIFTQNMDSKHWVSLIQAQWIDTYLEQNAGLATLEQSLCQRQLSLNQGLKLFRQTFLGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9907 - -


  Protein sequence: 320 a.a.    

>T6CP015850 NZ_JJOC02000004:c544890-543931 [Acinetobacter baumannii] [TagF]
MHTLKTTPLYYGKSPARGDFLKTKGQYALIQVLDQWITEALEYAMQSNMFKEAYSKLPSLDFFIANPQENMFLAANLLAS
EDSSGRAFPMVLSHLLEIDLPYENLLYAPYSYKHVLVDLFQNNRALRGIKDSDLLFGKLNHLPNQIQVLSERECVGFYEN
HTMHSFAQLMKLSIYELAQSMIGLGLLLQPILQNGTSRLNKVLILPINNPAYCYEIAAFWVSIICRFLKQHNTEVLIGLL
HREQPVLFFGFQGADILALSDIFTQNMDSKHWVSLIQAQWIDTYLEQNAGLATLEQSLCQRQLSLNQGLKLFRQTFLGE*

  Nucleotide sequence: 960 bp    

>T6CP015850 NZ_JJOC02000004:c544890-543931 [Acinetobacter baumannii] [TagF]
ATGCATACATTAAAAACAACTCCTCTGTATTACGGGAAAAGCCCTGCACGTGGTGACTTCTTAAAGACAAAAGGTCAATA
TGCCTTAATACAGGTACTTGATCAGTGGATAACAGAAGCATTGGAATATGCAATGCAGTCAAATATGTTCAAAGAAGCAT
ATAGCAAGTTGCCTTCATTGGATTTCTTTATTGCAAATCCACAAGAGAACATGTTCTTGGCTGCTAATTTGTTGGCGAGC
GAAGACAGTTCAGGTCGAGCTTTTCCGATGGTACTCAGTCATTTACTTGAGATTGATTTACCATATGAAAATTTACTATA
TGCACCTTATAGCTATAAGCATGTCTTAGTTGATTTATTTCAAAATAATCGTGCATTAAGAGGGATTAAAGATTCTGATT
TATTATTTGGTAAGCTAAATCATTTACCAAATCAAATTCAGGTTTTATCTGAACGTGAATGTGTAGGTTTTTATGAAAAT
CATACCATGCATTCATTTGCTCAGTTAATGAAGCTAAGTATTTATGAGTTAGCTCAAAGCATGATTGGTTTAGGATTACT
ACTACAACCAATTTTACAAAATGGGACTAGCCGTTTAAATAAAGTCTTGATTCTACCGATTAATAATCCTGCTTATTGTT
ATGAAATAGCGGCATTCTGGGTCAGTATTATTTGTCGTTTTTTAAAACAGCATAATACCGAAGTATTAATTGGATTGTTA
CATCGGGAGCAGCCAGTATTATTCTTTGGTTTTCAGGGTGCTGATATTTTAGCTCTTAGCGATATTTTTACTCAGAATAT
GGATAGCAAACATTGGGTTTCTTTAATACAAGCTCAATGGATTGATACTTATTTGGAACAGAATGCTGGTTTAGCAACGC
TAGAACAATCTTTATGTCAACGCCAATTAAGTTTAAATCAAGGTTTAAAACTATTTAGACAGACTTTTTTGGGTGAATAA