Detailed information of component protein
Summary
| Component ID | T6CP015845 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01274  (Type i2) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | IT767_RS08600 |
| Coordinate (Strand) | 1783754..1784245 (-) |
| NCBI ID | WP_004176434.1 |
| RefSeq | NZ_CP064352 |
| Uniprot ID | V0AWZ6_KLEPN, W1HNJ0_KLEPN, A0A264BV44_KLEVA, A0A652Q1X6_9ENTR, A0A6I4LTW9_9ENTR, A6T833_KLEP7, A0A3S4N0Z0_KLEAE, A0A4V0GXU9_KLEPN, A0A1Y0Q113_KLEPN |
| KEGG ID | kpn:KPN_01322, kpk:A593_21445, kpv:KPNIH29_11375, kpt:VK055_1107, kvq:SP68_00325, kpx:PMK1_03720, kpy:KPNIH31_11025 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 2.1e-52 | 7..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MADTFQNEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHGKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPNTLAGNGEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEMSALAPK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9936 | - | - |
Protein sequence: 164 a.a.
>T6CP015845 NZ_CP064352:c1784245-1783754 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssB]
MADTFQNEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHGKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPN
TLAGNGEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEMSAL
APK*
MADTFQNEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHGKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPN
TLAGNGEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEMSAL
APK*
Nucleotide sequence: 492 bp
>T6CP015845 NZ_CP064352:c1784245-1783754 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssB]
ATGGCTGATACGTTCCAGAATGAAGTCCCCAGGGCGCGCATTAATCTCAAATTATCTCTTCATACCGGCGGCGCGCAAAA
GAAGGTCGAACTGCCGCTGAAGCTGCTTACCATTGGCGATTTTAGTCATGGGAAGGAAAACCGGCCTTTATCGGAAAGAG
AAAAAATCAACGTCAATAAAAATAATTTTAACAGCGTACTTTCGGAATTTAGCCCGGAAGTTAACCTCTCGGTGCCGAAT
ACGCTGGCCGGCAATGGCGAAGAGGAGAACGTCAGACTGCGTTTTACCGACATCAAAGATTTTGAACCGGAGCAGGTTGC
CCGGCAAATTCCGCAACTCCGTGCCATGCTGGCGATGCGTAATTTATTACGCGATCTCAAATCCAATCTGCTTGATAACG
CCACTTTCAGAAAAGAGCTTGAGGCAATCCTGAAAGATCCGGCGCTGTCCCAGGAATTACGCGACGAAATGAGTGCGCTT
GCCCCGAAATAA
ATGGCTGATACGTTCCAGAATGAAGTCCCCAGGGCGCGCATTAATCTCAAATTATCTCTTCATACCGGCGGCGCGCAAAA
GAAGGTCGAACTGCCGCTGAAGCTGCTTACCATTGGCGATTTTAGTCATGGGAAGGAAAACCGGCCTTTATCGGAAAGAG
AAAAAATCAACGTCAATAAAAATAATTTTAACAGCGTACTTTCGGAATTTAGCCCGGAAGTTAACCTCTCGGTGCCGAAT
ACGCTGGCCGGCAATGGCGAAGAGGAGAACGTCAGACTGCGTTTTACCGACATCAAAGATTTTGAACCGGAGCAGGTTGC
CCGGCAAATTCCGCAACTCCGTGCCATGCTGGCGATGCGTAATTTATTACGCGATCTCAAATCCAATCTGCTTGATAACG
CCACTTTCAGAAAAGAGCTTGAGGCAATCCTGAAAGATCCGGCGCTGTCCCAGGAATTACGCGACGAAATGAGTGCGCTT
GCCCCGAAATAA