Detailed information of component protein


Summary

Component ID T6CP015843
Component protein type TssK
T6SS ID (Type) T6SS01274 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae ATCC 43816
Replicon chromosome
Sequence Protein sequence (448 a.a.); Nucleotide sequence (1344 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) IT767_RS08590
Coordinate (Strand) 1780814..1782157 (-)
NCBI ID WP_004224345.1
RefSeq NZ_CP064352
Uniprot ID UPI00027CD92F
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5.5e-136 19..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-447 MMKTERPLWGRGIMVSPQHFQQQAAYAAWTAEVIARMGLNHPWGVVEATFEPEMLKLGRLQAHRLQVRFQDGTMIDTDNADALPSALSLDGASGEAVIVLALPLMQANGGNCLKPEEVAERPVRFRQRWRDVRNQFGDDTRQIAVIQPELILRFAHQDNSDYLTCPLVRLQRDSQGAWLIDETFLPPLLQIQGSRWLATQLEQLLVQLRARLTRLMAMRRESNERMADFAVADVSLFWLLNALNSAEPVLGYFLRYRQSPPERLYPELARLAGSLLTFSLTHQANAVPIYQHDQLNAVFPPLFDLLSDLLEASLPSRVVAIALEHDVRLHFWQARLHDARLREGADYYLSVRSSVPVAQLQEQFPRQCKVGSPDHVKAIVNSSRTGVPLTPLRHVPAAIPLRLENQYFSLDVSHPLATEMLQSGTCMFYVPGMLGEPELELFAVLRT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9605 - -


  Protein sequence: 448 a.a.    

>T6CP015843 NZ_CP064352:c1782157-1780814 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssK]
MMKTERPLWGRGIMVSPQHFQQQAAYAAWTAEVIARMGLNHPWGVVEATFEPEMLKLGRLQAHRLQVRFQDGTMIDTDNA
DALPSALSLDGASGEAVIVLALPLMQANGGNCLKPEEVAERPVRFRQRWRDVRNQFGDDTRQIAVIQPELILRFAHQDNS
DYLTCPLVRLQRDSQGAWLIDETFLPPLLQIQGSRWLATQLEQLLVQLRARLTRLMAMRRESNERMADFAVADVSLFWLL
NALNSAEPVLGYFLRYRQSPPERLYPELARLAGSLLTFSLTHQANAVPIYQHDQLNAVFPPLFDLLSDLLEASLPSRVVA
IALEHDVRLHFWQARLHDARLREGADYYLSVRSSVPVAQLQEQFPRQCKVGSPDHVKAIVNSSRTGVPLTPLRHVPAAIP
LRLENQYFSLDVSHPLATEMLQSGTCMFYVPGMLGEPELELFAVLRT*

  Nucleotide sequence: 1344 bp    

>T6CP015843 NZ_CP064352:c1782157-1780814 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssK]
ATGATGAAAACGGAACGTCCGTTGTGGGGCCGGGGCATTATGGTGTCGCCTCAGCATTTTCAACAGCAGGCTGCGTATGC
AGCCTGGACTGCGGAAGTGATTGCCCGGATGGGTCTTAACCACCCTTGGGGAGTGGTTGAGGCGACCTTCGAACCAGAGA
TGCTCAAACTGGGCCGCCTGCAGGCTCACAGGCTGCAGGTCCGGTTCCAGGATGGCACGATGATTGATACGGACAATGCC
GATGCGCTGCCGTCCGCGCTGTCGCTGGACGGCGCGTCCGGCGAGGCGGTGATCGTGCTGGCGCTGCCCCTGATGCAGGC
GAATGGCGGCAACTGTCTGAAGCCGGAGGAGGTGGCCGAAAGGCCGGTGCGCTTCCGGCAGCGCTGGCGCGATGTCCGTA
ACCAGTTTGGGGATGATACCCGGCAGATTGCCGTCATACAGCCGGAGCTGATCCTCCGCTTCGCCCACCAGGACAACAGC
GATTACCTGACCTGTCCGCTTGTTCGCCTGCAGCGGGACTCGCAGGGGGCCTGGCTTATCGACGAGACGTTTCTCCCGCC
GCTGCTGCAGATCCAGGGCAGCCGCTGGCTGGCGACGCAGCTTGAACAGCTGCTCGTCCAGCTCCGGGCTCGTCTGACGC
GCCTGATGGCCATGCGTCGCGAAAGCAATGAACGGATGGCTGATTTTGCCGTGGCTGATGTCTCTCTGTTCTGGTTGCTG
AATGCGCTGAACAGCGCCGAGCCGGTGCTGGGGTACTTTCTGCGTTACCGGCAAAGCCCGCCGGAACGCCTCTACCCGGA
GCTGGCGCGCCTGGCTGGTAGCCTGCTGACCTTTTCGCTCACCCATCAGGCGAATGCCGTCCCGATCTATCAGCATGACC
AGCTGAACGCGGTTTTTCCGCCGCTGTTTGATTTACTGAGCGACCTGCTGGAGGCGAGCCTGCCATCGCGGGTGGTGGCG
ATTGCGCTGGAGCATGATGTCCGGCTGCACTTCTGGCAGGCGCGTCTGCACGATGCCCGGCTGCGGGAAGGGGCTGATTA
CTACCTGTCGGTTCGTTCGTCGGTACCGGTCGCCCAACTGCAGGAGCAGTTTCCGCGCCAGTGCAAAGTGGGCAGTCCGG
ATCATGTCAAAGCCATCGTCAACTCCTCGCGGACAGGGGTGCCCCTCACGCCATTGCGTCATGTGCCGGCGGCGATCCCG
CTGCGTCTGGAAAATCAGTATTTCAGCCTCGATGTGTCCCACCCTCTGGCAACGGAAATGCTGCAGAGCGGCACCTGTAT
GTTTTACGTCCCGGGGATGCTCGGTGAGCCTGAACTTGAACTTTTTGCGGTACTACGAACGTGA