Detailed information of component protein
Summary
| Component ID | T6CP015841 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01274  (Type i2) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | IT767_RS08575 |
| Coordinate (Strand) | 1777929..1778420 (-) |
| NCBI ID | WP_002902160.1 |
| RefSeq | NZ_CP064352 |
| Uniprot ID | A0A0H3GMC3_KLEPH, A0A7U7IJ29_KLEPN, W1DW38_KLEPN, W1ERT8_KLEPN, W1HVR0_KLEPN, A0A1F2LWX0_9ENTR, A0A223UC57_9ENTR, A0A264BVD1_KLEVA, A0A7U2ZMJ7_9ENTR, A0A652Q1A1_9ENTR, A0A6I4LNL9_9ENTR, A6T838_KLEP7, A0A3S4LPK0_KLEAE, A0A0J2G7E8_KLEPN, A0A1Y0Q1G9_KLEPN |
| KEGG ID | kpg:KPNIH32_11835, kpm:KPHS_23020, kpx:PMK1_03725, kpnu:LI86_14600, kvq:SP68_00350, kpw:KPNIH30_11995, kpn:KPN_01327, kpy:KPNIH31_11050, kpb:FH42_02920, kpt:VK055_1101, kpne:KU54_014665 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.5e-37 | 6..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNERATA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9879 | - | - |
Protein sequence: 164 a.a.
>T6CP015841 NZ_CP064352:c1778420-1777929 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssD]
MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQ
TLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNER
ATA*
MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQ
TLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNER
ATA*
Nucleotide sequence: 492 bp
>T6CP015841 NZ_CP064352:c1778420-1777929 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssD]
ATGGCAATTCCTGTTTATCTTTGGCTGAAAGACGACGGCGGCGCGGACATTAAAGGGTCTGTCGACGTTCAGGATCGTGA
AGGCAGTATCGAAGTGGTGGCTCAGGAGCATAACCTGTACATCCCGACCGATAACAACACCGGCAAACTGACCGGCACGC
GTATTCATACGCCGTTCCTGTTCACCAAGGAGATCGACTCCTCCAGCCCCTACCTGTACAAGGCAGTGACCACCGGCCAG
ACCCTGAAATCCGCTGAGTTCAAGTGGTACCGAATCAACGATGCAGGCCAGGAAGTGGAGTATTTCAATACCAAACTTGA
GAACGTCAAGGTGGTGAAAGTGAATCCCCTGATGCACGACATCAAAAACCCCGCCTACGAGAAGCACAACCATCTGGAAC
AGATTGAGCTGCGCTACGAGAAGATCACCTGGACCTATAAAGACGGCAACATCATTCACTCCGATAGCTGGAACGAACGC
GCCACCGCGTAA
ATGGCAATTCCTGTTTATCTTTGGCTGAAAGACGACGGCGGCGCGGACATTAAAGGGTCTGTCGACGTTCAGGATCGTGA
AGGCAGTATCGAAGTGGTGGCTCAGGAGCATAACCTGTACATCCCGACCGATAACAACACCGGCAAACTGACCGGCACGC
GTATTCATACGCCGTTCCTGTTCACCAAGGAGATCGACTCCTCCAGCCCCTACCTGTACAAGGCAGTGACCACCGGCCAG
ACCCTGAAATCCGCTGAGTTCAAGTGGTACCGAATCAACGATGCAGGCCAGGAAGTGGAGTATTTCAATACCAAACTTGA
GAACGTCAAGGTGGTGAAAGTGAATCCCCTGATGCACGACATCAAAAACCCCGCCTACGAGAAGCACAACCATCTGGAAC
AGATTGAGCTGCGCTACGAGAAGATCACCTGGACCTATAAAGACGGCAACATCATTCACTCCGATAGCTGGAACGAACGC
GCCACCGCGTAA