Detailed information of component protein
Summary
| Component ID | T6CP015833 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS01273  (Type Unknown) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 |
| Replicon | chromosome |
| Sequence | Protein sequence (472 a.a.); Nucleotide sequence (1416 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 877982..879397 (+) |
| NCBI ID | WP_038431343.1 |
| RefSeq | NZ_CP064352 |
| Uniprot ID | UPI0004ED8284 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-246 | MMTTHHDRHYKAGGDPRTLADFMALRAEMNKLSHPARPDINWPYAEQLARGLLEHHGADLQTVAWYTLARARLGGVAGINEGLTLMESLLVRQGKNLWPQALPARTEIFRTLSKRLRQVIRTLNLTPEDVESLEQAERSLQSFDAVLQRLEIAPDNQLSDLRALLHSTATRFESLDPAPALPTAPPVAVSDAELPGTLVSEEDAAKVEPVPDLKRRPKAEPLAPPSPAKRPAPVAASTPAAAPRWK |
| Transmembrane helix | 247-269 | PFIAGMVTMLAVTGIAVGGWLAL |
| Outside | 270-471 | RQSDLPPISVTQNAGPIPGLPATTPPGPVDLPQTQRQLGELARLAPDWAVSYGDQLVRQALIRWPDQAQPLEQQWRQQLSAGALPAENLTGWSEGMQQLQRLADQLNALDEQKGKYLTVSELKTAVFAITQSFNRAVPLEEQLRQLAALPVDQPWPAARGSLAELHLQQLIVEYALLKRKQPASPTAALPRTGEPSVSEAVK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9867 | - | - |
Protein sequence: 472 a.a.
Nucleotide sequence: 1416 bp