Detailed information of component protein
Summary
| Component ID | T6CP015832 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01273  (Type Unknown) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 |
| Replicon | chromosome |
| Sequence | Protein sequence (148 a.a.); Nucleotide sequence (444 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | IT767_RS04080 |
| Coordinate (Strand) | 877519..877962 (+) |
| NCBI ID | WP_004175538.1 |
| RefSeq | NZ_CP064352 |
| Uniprot ID | A0A7U7IHU2_KLEPN, V0B8T7_KLEPN, W1DPY7_KLEPN, W1EQA9_KLEPN, A0A652PZ93_9ENTR, A0A3S4KTZ8_KLEAE, W9BHS4_KLEPN, A0A377ZFW2_KLEPN |
| KEGG ID | kpnk:BN49_3356, kpt:VK055_0202, kpv:KPNIH29_16210, kpy:KPNIH31_15680, kpx:PMK1_04614 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 5.8e-12 | 32..113 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-147 | MPRPSLYDILYGNFAGGLDLNTVSETDQVILSVLDNMQRILNCRAGTLAHLPDYGLPDMTAVLQGMPASAHQLMSTLSAVLLKYEPRLQRIAVVMLDQHAPGELRYAIDAELKDIGLVRYGTEFMPEGRVLIRHLKRQQYLDARSAL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9812 | - | - |
Protein sequence: 148 a.a.
>T6CP015832 NZ_CP064352:877519-877962 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssE]
MPRPSLYDILYGNFAGGLDLNTVSETDQVILSVLDNMQRILNCRAGTLAHLPDYGLPDMTAVLQGMPASAHQLMSTLSAV
LLKYEPRLQRIAVVMLDQHAPGELRYAIDAELKDIGLVRYGTEFMPEGRVLIRHLKRQQYLDARSAL*
MPRPSLYDILYGNFAGGLDLNTVSETDQVILSVLDNMQRILNCRAGTLAHLPDYGLPDMTAVLQGMPASAHQLMSTLSAV
LLKYEPRLQRIAVVMLDQHAPGELRYAIDAELKDIGLVRYGTEFMPEGRVLIRHLKRQQYLDARSAL*
Nucleotide sequence: 444 bp
>T6CP015832 NZ_CP064352:877519-877962 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssE]
ATGCCTCGTCCCTCCCTGTATGACATCCTGTACGGCAATTTCGCCGGCGGGCTTGACCTGAATACCGTCAGCGAAACGGA
TCAGGTCATCCTGTCGGTGCTCGATAACATGCAGCGCATCCTCAACTGTCGGGCCGGAACGCTGGCGCATTTGCCGGACT
ACGGCCTGCCGGATATGACCGCTGTCCTCCAGGGGATGCCAGCGTCGGCGCATCAGCTGATGAGCACGTTGTCGGCGGTG
TTGCTGAAATACGAACCGCGCCTGCAGCGGATCGCGGTGGTGATGCTCGATCAGCATGCGCCCGGCGAACTGCGCTATGC
CATTGATGCGGAGCTGAAGGATATTGGCCTGGTGCGTTACGGCACGGAGTTTATGCCCGAGGGCAGGGTGTTGATCCGCC
ACCTCAAACGTCAGCAGTACCTTGACGCCCGCTCCGCCCTCTAA
ATGCCTCGTCCCTCCCTGTATGACATCCTGTACGGCAATTTCGCCGGCGGGCTTGACCTGAATACCGTCAGCGAAACGGA
TCAGGTCATCCTGTCGGTGCTCGATAACATGCAGCGCATCCTCAACTGTCGGGCCGGAACGCTGGCGCATTTGCCGGACT
ACGGCCTGCCGGATATGACCGCTGTCCTCCAGGGGATGCCAGCGTCGGCGCATCAGCTGATGAGCACGTTGTCGGCGGTG
TTGCTGAAATACGAACCGCGCCTGCAGCGGATCGCGGTGGTGATGCTCGATCAGCATGCGCCCGGCGAACTGCGCTATGC
CATTGATGCGGAGCTGAAGGATATTGGCCTGGTGCGTTACGGCACGGAGTTTATGCCCGAGGGCAGGGTGTTGATCCGCC
ACCTCAAACGTCAGCAGTACCTTGACGCCCGCTCCGCCCTCTAA