Detailed information of component protein


Summary

Component ID T6CP015831
Component protein type TssJ
T6SS ID (Type) T6SS01273 experimental (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae ATCC 43816
Replicon chromosome
Sequence Protein sequence (179 a.a.); Nucleotide sequence (537 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) IT767_RS04075
Coordinate (Strand) 876980..877516 (+)
NCBI ID WP_004175532.1
RefSeq NZ_CP064352
Uniprot ID UPI0001576BE4
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1e-32 47..167

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-178 MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARPRIIEASQNQLTLHPFKEK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9977 pos: 23-24. LTG-CG. MAITAVKPSARLLAFLMVTVLTG



  Protein sequence: 179 a.a.    

>T6CP015831 NZ_CP064352:876980-877516 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssJ]
MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDR
QAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARP
RIIEASQNQLTLHPFKEK*

  Nucleotide sequence: 537 bp    

>T6CP015831 NZ_CP064352:876980-877516 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssJ]
ATGGCGATTACCGCAGTTAAACCCTCCGCCAGGTTGCTGGCATTCCTCATGGTTACCGTCTTAACCGGCTGCGGACTGAC
GCAGACCGTGAAAGACGGCGCCGTTTCCGTGACCCAGTCCATTTTTTACCCCCAGGTGAAAACCCTGCATCTGGATCTTC
GCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGACGGTGGTGCGTATTTATCAGCTGAAGGACCGG
CAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGCCAGGCGCTGCAGGCGGACCGGGTGGCGGAAAA
AGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCATGGAAACCAGCGCGCAGTTTGTGGCGGTGGCGG
CCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTACTCACCCGGGACGAACTTGATCCGGCGAGGCCG
CGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAGGAGAAGTGA