Detailed information of component protein


Summary

Component ID T6CP015830
Component protein type TssG
T6SS ID (Type) T6SS01273 experimental (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae ATCC 43816
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) IT767_RS04070
Coordinate (Strand) 875983..876999 (+)
NCBI ID WP_074182212.1
RefSeq NZ_CP064352
Uniprot ID UPI0009407499
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-73 1..298

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-338 MNFYRFCQLLEKNHPKAPIIGSGWLVGDEPIRFRPHPGMGFPAGEIRGMDDPEPPRPPAVRVTFMGLYGVESPLPTHYSDDIAQRREGVEATEDFLDLFNHRLIAQYYRIWRKYSYPATFRAGGTDNISQYLLGLAGLGIPGCAAVAAAPLSRFLALLPVMMLPGRSGEGMEALVALLAPGTRATVYHHDPCRIPLSQPLTMSVRQPVSLQHRPVMGTHATDVNGQVLLQLATEKPDEVRGWLPGGELFSDLMALLHVWLGSHLDVRLQLCVARHLLPDAQLCCQQEHAVQLGRTAVLRPLDAQKQADDRVTIYLGRYQRVRENIHRRESDEDGDYRS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9772 - -



  Protein sequence: 339 a.a.    

>T6CP015830 NZ_CP064352:875983-876999 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssG]
MNFYRFCQLLEKNHPKAPIIGSGWLVGDEPIRFRPHPGMGFPAGEIRGMDDPEPPRPPAVRVTFMGLYGVESPLPTHYSD
DIAQRREGVEATEDFLDLFNHRLIAQYYRIWRKYSYPATFRAGGTDNISQYLLGLAGLGIPGCAAVAAAPLSRFLALLPV
MMLPGRSGEGMEALVALLAPGTRATVYHHDPCRIPLSQPLTMSVRQPVSLQHRPVMGTHATDVNGQVLLQLATEKPDEVR
GWLPGGELFSDLMALLHVWLGSHLDVRLQLCVARHLLPDAQLCCQQEHAVQLGRTAVLRPLDAQKQADDRVTIYLGRYQR
VRENIHRRESDEDGDYRS*

  Nucleotide sequence: 1017 bp    

>T6CP015830 NZ_CP064352:875983-876999 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssG]
ATGAATTTTTACCGCTTCTGCCAGTTGCTGGAGAAGAACCATCCGAAGGCGCCGATCATCGGCAGCGGCTGGCTAGTAGG
TGATGAACCCATACGCTTTCGCCCGCATCCGGGGATGGGCTTTCCGGCTGGCGAAATCCGCGGAATGGACGATCCTGAAC
CGCCCCGTCCGCCGGCGGTTCGCGTGACTTTTATGGGACTCTACGGCGTGGAATCCCCGCTGCCGACCCACTATAGCGAT
GACATTGCGCAACGGCGGGAAGGCGTCGAGGCCACCGAGGATTTCCTCGATCTCTTTAACCATCGGCTGATCGCCCAGTA
TTACCGTATCTGGCGCAAATATTCCTACCCGGCAACCTTTCGGGCGGGCGGCACGGACAACATCTCGCAGTATCTGCTCG
GCCTGGCGGGGCTGGGCATACCGGGATGTGCCGCCGTTGCCGCAGCGCCGCTGTCGCGATTTCTGGCGCTGCTGCCGGTG
ATGATGCTGCCGGGGAGATCCGGGGAAGGCATGGAGGCGCTGGTGGCGCTCCTGGCCCCGGGGACCCGGGCGACGGTGTA
CCACCACGATCCCTGCCGGATCCCCTTGTCGCAGCCGTTAACGATGAGCGTCCGTCAGCCGGTTAGCCTGCAACATAGGC
CAGTGATGGGAACCCACGCCACGGATGTGAACGGTCAGGTATTGCTGCAGCTGGCCACGGAAAAGCCTGATGAGGTTCGC
GGCTGGCTGCCCGGCGGCGAACTGTTCAGCGACCTGATGGCGCTTCTGCACGTCTGGCTCGGATCTCATCTTGACGTGCG
GCTGCAGCTTTGCGTCGCCCGCCATTTACTGCCGGATGCGCAACTTTGCTGCCAGCAGGAGCATGCCGTCCAGCTCGGCC
GTACCGCTGTGCTGCGTCCTCTGGATGCGCAGAAACAGGCTGACGACAGAGTCACGATTTATCTGGGGCGCTATCAGCGC
GTCCGGGAAAATATCCACCGCAGGGAGAGCGATGAAGATGGCGATTACCGCAGTTAA