Detailed information of component protein


Summary

Component ID T6CP015829
Component protein type TssF
T6SS ID (Type) T6SS01273 experimental (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae ATCC 43816
Replicon chromosome
Sequence Protein sequence (588 a.a.); Nucleotide sequence (1764 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) IT767_RS04065
Coordinate (Strand) 874190..875953 (+)
NCBI ID WP_032411370.1
RefSeq NZ_CP064352
Uniprot ID UPI00049F039C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.8e-181 1..582
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-587 MDDLTLRYFDAEMRYLREAAKAFAQAHPDRAAMLDLDKAGTPDPYVERLFEGFAFSVGRLREKIDDDLPELTEGLVSMLWPHYLRTIPSLSIVALTPTLPAMKIAETVPAGFEISSRPLGPKNTVCRYRTTRDLTLNPLAIEEAVMTAEPDGRSALRLRFACSELADWSQTDLRRLALYLGEDAVTGSALHLWLTRRQAVLYLRLPGQTERVSLDGYFSPGGFSEEDRLWPKGESAFSGYQLLLEYFTFREKFMFVQLNGLENITLPAGISHFTLEVVFSEVWQSDLPVSASSLRLHCVPVINLFTLEADPLTISGLESEYLLRPKRLQDGHTEIYSVDSVTGSGRTGEARYVPFTRFRHQGGMMRRHAPERYYHTRVKRGVTGMHDTWLILGGQQWEADRELARETVSLRITGTNGQLPRRALQSTLLDRCESISATPLTVRNLCKPTLPAYPPAEDRYHWRVMSHLGTRFLNMMSSAEVLRGTLSLYNWREDELNNRRLDAILAVSHHRIQRFEQGFLLRGLDIEVTLDGSGFTGAGDVHLFGDMLNRFFALYADMNQFNQLTLIVQPEGKCIRWKENHSLRLPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9934 - -


  Protein sequence: 588 a.a.    

>T6CP015829 NZ_CP064352:874190-875953 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssF]
MDDLTLRYFDAEMRYLREAAKAFAQAHPDRAAMLDLDKAGTPDPYVERLFEGFAFSVGRLREKIDDDLPELTEGLVSMLW
PHYLRTIPSLSIVALTPTLPAMKIAETVPAGFEISSRPLGPKNTVCRYRTTRDLTLNPLAIEEAVMTAEPDGRSALRLRF
ACSELADWSQTDLRRLALYLGEDAVTGSALHLWLTRRQAVLYLRLPGQTERVSLDGYFSPGGFSEEDRLWPKGESAFSGY
QLLLEYFTFREKFMFVQLNGLENITLPAGISHFTLEVVFSEVWQSDLPVSASSLRLHCVPVINLFTLEADPLTISGLESE
YLLRPKRLQDGHTEIYSVDSVTGSGRTGEARYVPFTRFRHQGGMMRRHAPERYYHTRVKRGVTGMHDTWLILGGQQWEAD
RELARETVSLRITGTNGQLPRRALQSTLLDRCESISATPLTVRNLCKPTLPAYPPAEDRYHWRVMSHLGTRFLNMMSSAE
VLRGTLSLYNWREDELNNRRLDAILAVSHHRIQRFEQGFLLRGLDIEVTLDGSGFTGAGDVHLFGDMLNRFFALYADMNQ
FNQLTLIVQPEGKCIRWKENHSLRLPG*

  Nucleotide sequence: 1764 bp    

>T6CP015829 NZ_CP064352:874190-875953 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssF]
ATGGACGATTTAACCCTGCGATATTTTGATGCTGAAATGCGCTACCTGCGCGAGGCGGCAAAAGCGTTCGCGCAGGCTCA
CCCCGATCGGGCGGCGATGCTGGATCTCGATAAAGCCGGTACGCCGGACCCTTACGTTGAGCGCCTGTTTGAAGGCTTTG
CCTTTTCCGTAGGTCGCTTGCGCGAAAAAATTGATGATGATCTGCCGGAGCTGACCGAGGGGCTGGTCAGCATGCTGTGG
CCGCACTATTTGCGCACTATTCCATCGCTATCGATCGTGGCGCTGACCCCAACGCTGCCGGCGATGAAGATAGCGGAAAC
GGTGCCCGCCGGGTTTGAGATTAGCTCCCGCCCACTGGGGCCGAAAAATACCGTGTGCCGGTACCGAACCACCCGCGATC
TGACGCTTAACCCGCTGGCGATAGAGGAGGCGGTGATGACGGCGGAGCCGGACGGACGTTCGGCCCTGCGACTACGATTC
GCCTGTAGCGAGCTGGCTGACTGGTCGCAGACCGATCTCCGCCGCCTGGCGCTGTACCTGGGGGAAGACGCCGTTACCGG
CAGCGCCCTCCATCTGTGGCTGACCCGACGCCAGGCCGTGCTGTACCTGCGTCTGCCGGGTCAGACAGAGCGGGTAAGCC
TCGACGGCTATTTTTCCCCGGGGGGATTCAGCGAGGAGGATCGTTTATGGCCGAAGGGGGAGAGCGCTTTCAGCGGCTAT
CAGCTGCTGCTCGAGTATTTCACCTTTCGCGAAAAATTTATGTTCGTGCAGCTAAATGGCCTGGAAAACATCACCCTGCC
GGCGGGGATATCGCATTTCACGCTTGAGGTGGTGTTCAGCGAGGTCTGGCAAAGTGATTTACCCGTCAGCGCAAGCAGCC
TGCGCCTGCACTGTGTGCCGGTGATTAACCTGTTTACCCTTGAGGCCGATCCGTTGACCATCAGCGGGCTGGAGAGCGAA
TATCTCCTGCGTCCGAAGCGCCTGCAGGACGGGCATACCGAAATCTATTCTGTTGACAGCGTGACCGGCTCCGGGCGCAC
CGGGGAGGCACGCTATGTGCCTTTCACCCGCTTTCGTCACCAGGGGGGAATGATGCGTCGCCATGCGCCGGAGCGCTACT
ACCACACCCGCGTAAAACGGGGCGTAACCGGCATGCACGATACCTGGCTTATCCTCGGCGGACAGCAATGGGAGGCTGAC
CGGGAGCTGGCGCGGGAAACGGTCTCCTTGCGCATCACCGGCACTAACGGCCAGCTGCCGCGCCGGGCGCTACAGAGCAC
ACTGCTGGATCGCTGTGAGTCGATATCAGCCACGCCGCTTACCGTCCGCAATCTCTGTAAGCCCACGCTGCCGGCCTATC
CCCCGGCGGAAGACCGCTACCACTGGCGGGTCATGAGCCATCTGGGCACCCGTTTTCTCAACATGATGAGCAGCGCCGAG
GTGCTGCGCGGCACGCTGTCGCTCTACAACTGGCGGGAGGATGAGCTCAATAATCGCCGTCTGGACGCCATTCTGGCGGT
CAGCCATCACCGAATTCAGCGTTTCGAGCAGGGTTTCCTGCTGCGCGGGCTGGATATTGAAGTGACGCTCGACGGTAGCG
GATTTACCGGTGCGGGCGATGTCCACCTGTTTGGCGATATGCTCAACCGCTTTTTCGCACTGTATGCCGATATGAATCAG
TTCAACCAGCTGACGCTCATTGTTCAACCTGAAGGGAAATGTATCCGGTGGAAAGAGAATCACAGTCTGCGCCTGCCCGG
CTGA