Detailed information of component protein


Summary

Component ID T6CP015825
Component protein type TssK
T6SS ID (Type) T6SS01273 experimental (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae ATCC 43816
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) IT767_RS03985
Coordinate (Strand) 850912..852252 (+)
NCBI ID WP_004899025.1
RefSeq NZ_CP064352
Uniprot ID A0A7U7F582_KLEPN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.5e-132 18..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MKIFRPLWRDGAFLVPQQFQQQARWDAHVADTVSRMALAHPWGVLRAEFDASALTLSRLNATRLIVRFADGTLIDTELADILPPVRDVSDVMQDSVEVLLALPLLSASGGNLDDGQESARPRRWRAEQVTVQELAGHERSELAVLRHALTLRLSTEENAAFLTCPVARLVRDAQGQWIVDPEFIPPLLSLAASPTLVSELGELLHRLQARRRRLMAMRRESNARMADFAVADVSLFWLLNALNSAEPVLSELHQYPSRHPELLYRELARLAGSLLTFSLEHHLEAIPRYRHASPEQVFPPLFALLDTLLEVSLPSRVIAIVLEQGADREIWRGRLHDARLREGADFYLSVRSSLPPHQLQSRFPQLCKAGSHDDVAEVVNIALSGIAIKPLSHVPAAIPLRLENQYFALDLSTDAARAMLEAGNCTFYTPESLGDVKLELFAVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9874 - -


  Protein sequence: 447 a.a.    

>T6CP015825 NZ_CP064352:850912-852252 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssK]
MKIFRPLWRDGAFLVPQQFQQQARWDAHVADTVSRMALAHPWGVLRAEFDASALTLSRLNATRLIVRFADGTLIDTELAD
ILPPVRDVSDVMQDSVEVLLALPLLSASGGNLDDGQESARPRRWRAEQVTVQELAGHERSELAVLRHALTLRLSTEENAA
FLTCPVARLVRDAQGQWIVDPEFIPPLLSLAASPTLVSELGELLHRLQARRRRLMAMRRESNARMADFAVADVSLFWLLN
ALNSAEPVLSELHQYPSRHPELLYRELARLAGSLLTFSLEHHLEAIPRYRHASPEQVFPPLFALLDTLLEVSLPSRVIAI
VLEQGADREIWRGRLHDARLREGADFYLSVRSSLPPHQLQSRFPQLCKAGSHDDVAEVVNIALSGIAIKPLSHVPAAIPL
RLENQYFALDLSTDAARAMLEAGNCTFYTPESLGDVKLELFAVLRS*

  Nucleotide sequence: 1341 bp    

>T6CP015825 NZ_CP064352:850912-852252 [Klebsiella pneumoniae subsp. pneumoniae ATCC 43816] [TssK]
ATGAAGATTTTCCGCCCATTATGGCGCGACGGGGCTTTTCTGGTCCCGCAGCAGTTTCAGCAACAGGCCCGCTGGGACGC
GCACGTCGCCGATACGGTCTCCCGCATGGCGCTCGCCCACCCGTGGGGGGTATTGCGCGCGGAGTTTGACGCGAGCGCGC
TCACCCTTTCCCGGCTCAACGCTACCCGGCTGATCGTGCGTTTCGCCGACGGAACGCTGATTGACACCGAGCTGGCGGAT
ATTTTGCCACCGGTCCGCGATGTATCGGACGTGATGCAGGACAGCGTGGAGGTTCTGCTCGCTCTGCCGCTGCTCAGCGC
CAGCGGCGGCAATCTTGATGACGGCCAGGAGAGCGCCCGCCCGCGCCGCTGGCGCGCCGAGCAGGTGACCGTCCAGGAGC
TGGCCGGCCATGAACGCAGCGAGCTGGCCGTTCTGCGGCACGCGCTAACGCTGCGTCTCTCCACCGAGGAAAATGCAGCC
TTCCTCACCTGCCCGGTAGCGCGTCTGGTGCGCGACGCCCAGGGGCAGTGGATCGTTGACCCGGAATTCATCCCGCCGCT
GCTGTCGCTGGCGGCAAGCCCGACGCTGGTTAGCGAGCTGGGCGAGCTGTTACATCGCCTGCAGGCCCGACGCAGACGCC
TGATGGCCATGCGCCGTGAAAGCAATGCGCGGATGGCTGATTTTGCCGTGGCGGATGTCTCATTGTTCTGGCTGCTCAAT
GCGCTGAACAGCGCTGAACCGGTGCTCAGCGAGCTGCATCAGTACCCTTCGCGCCATCCGGAGCTGCTCTATCGCGAACT
GGCCAGGCTGGCCGGCAGTCTGCTGACTTTCTCCCTTGAACATCATCTGGAAGCAATCCCCCGCTACCGGCATGCCTCGC
CAGAGCAGGTATTCCCACCGCTGTTTGCCCTGCTGGATACGCTGCTCGAAGTCAGCCTGCCCTCAAGGGTGATCGCCATC
GTTCTGGAGCAGGGCGCCGACCGGGAGATCTGGCGGGGCAGGCTGCACGATGCGCGGCTGCGCGAGGGGGCGGATTTTTA
TCTGTCGGTGCGCTCTTCACTCCCCCCTCACCAGCTACAGAGCCGCTTTCCGCAGCTCTGTAAGGCGGGTAGCCATGATG
ATGTCGCCGAGGTCGTCAATATTGCCCTCAGCGGCATCGCGATCAAACCGCTGAGCCATGTGCCGGCGGCCATTCCGCTA
CGTCTGGAAAACCAATATTTCGCTCTGGATCTCTCCACCGATGCCGCCCGCGCGATGCTGGAGGCCGGCAACTGCACCTT
CTATACCCCGGAATCGCTTGGCGACGTGAAACTTGAACTCTTTGCGGTACTGCGCTCATGA