Detailed information of component protein


Summary

Component ID T6CP015757
Component protein type TssI
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (780 a.a.); Nucleotide sequence (2340 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02765
Coordinate (Strand) 598864..601203 (-)
NCBI ID 727185929
RefSeq NZ_JWLO01000001
Uniprot ID A0A2S4XAV5_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.9e-89 25..328
Phage_base_V PF04717.14 2.1e-13 383..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-779 MDRLIIAHTPLPSHQLLFRSLSGEEKLAGLFEFDVELLSPDNRLDLKALLGQKITLELRGNPLAPRYLNGNITRMTLSGREAGGNRYYIYRAVLRPTLWYLTQNRDFRIYQEKTVPDILTQVLGQYQVKIDNRLSYDYRIWGYCVQYQESDFDFISRLMEHEGIYYYFTHQQDGHTLVLADAPSAHQELAGYASIPYQLAEGGLVENKDSINSWSVSDAITPSLYSLDDYDFRKPRARLLEARQNPASFAQDKAEVFDWPGRYTDHAHGQFYVKVRQQEFEAQHEQMSGEGSSQGIAPGYRFQLIQAPRMEDNRAYLVVSAHYFMQENSYASNDNDVGEQRTEFQVVPADINWRPARITPWPKTHGPQTAEVVGPEGESIWTDKYGRVKLKFRWDRHGSGNETSSCWVRVSSAWAGWKYGGIQIPRVGEEVVVDFINGDPDRPIITGRVYNEDSMPPWDLPGDATKMGFMSRSKGGGADNASFLFLEDSPGNESFDMHAERNMNMTVENDKNVNIDGSRTTTIGRKQDDTVTGDATFLYKAKRTTTVDGLETANLNAHQTVNIKGGRDLTIIDGGDKIDITGNQSFKLDGAQTQNITQTQHVTVKGNQTLDITEGQQTSTIKQGQTVNITSGGQHTTITAGGQELTVKGGGQTATVTGNVTETYKNDQSTTITGTLTIKAKTINITSADGVSVQTPSWKDNCHGWKWVATGANFAFYGSNLALTGASLKHTMLDISHNPLAISKTNFKLSNDPMTFTQLGALVTNGALRLSTKALAIFL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9927 - -


  Protein sequence: 780 a.a.    

>T6CP015757 NZ_JWLO01000001:c601203-598864 [Serratia marcescens] [TssI]
MDRLIIAHTPLPSHQLLFRSLSGEEKLAGLFEFDVELLSPDNRLDLKALLGQKITLELRGNPLAPRYLNGNITRMTLSGR
EAGGNRYYIYRAVLRPTLWYLTQNRDFRIYQEKTVPDILTQVLGQYQVKIDNRLSYDYRIWGYCVQYQESDFDFISRLME
HEGIYYYFTHQQDGHTLVLADAPSAHQELAGYASIPYQLAEGGLVENKDSINSWSVSDAITPSLYSLDDYDFRKPRARLL
EARQNPASFAQDKAEVFDWPGRYTDHAHGQFYVKVRQQEFEAQHEQMSGEGSSQGIAPGYRFQLIQAPRMEDNRAYLVVS
AHYFMQENSYASNDNDVGEQRTEFQVVPADINWRPARITPWPKTHGPQTAEVVGPEGESIWTDKYGRVKLKFRWDRHGSG
NETSSCWVRVSSAWAGWKYGGIQIPRVGEEVVVDFINGDPDRPIITGRVYNEDSMPPWDLPGDATKMGFMSRSKGGGADN
ASFLFLEDSPGNESFDMHAERNMNMTVENDKNVNIDGSRTTTIGRKQDDTVTGDATFLYKAKRTTTVDGLETANLNAHQT
VNIKGGRDLTIIDGGDKIDITGNQSFKLDGAQTQNITQTQHVTVKGNQTLDITEGQQTSTIKQGQTVNITSGGQHTTITA
GGQELTVKGGGQTATVTGNVTETYKNDQSTTITGTLTIKAKTINITSADGVSVQTPSWKDNCHGWKWVATGANFAFYGSN
LALTGASLKHTMLDISHNPLAISKTNFKLSNDPMTFTQLGALVTNGALRLSTKALAIFL*

  Nucleotide sequence: 2340 bp    

>T6CP015757 NZ_JWLO01000001:c601203-598864 [Serratia marcescens] [TssI]
ATGGATCGCCTTATCATTGCGCACACGCCTTTGCCCTCCCATCAGCTGTTGTTCAGAAGCCTTTCCGGTGAGGAAAAACT
GGCCGGATTGTTCGAGTTCGACGTCGAGCTGCTCAGCCCCGACAATCGGCTCGATCTGAAAGCGCTGCTGGGACAAAAAA
TCACGTTGGAGCTGCGGGGCAATCCGCTGGCGCCGCGCTATCTCAACGGCAATATCACGCGCATGACTCTCTCCGGACGG
GAAGCAGGCGGCAACCGTTACTATATCTACCGCGCCGTGCTGCGCCCCACGCTGTGGTATCTGACGCAAAACCGCGATTT
TCGCATCTACCAGGAAAAGACCGTTCCCGACATCCTGACTCAGGTGCTGGGGCAGTATCAGGTGAAAATCGATAATCGCC
TGAGTTACGACTACCGCATCTGGGGGTACTGCGTGCAGTACCAAGAGAGCGATTTCGATTTCATCAGTCGCCTGATGGAG
CACGAAGGCATCTATTACTATTTCACGCACCAGCAAGACGGCCATACGCTGGTGCTGGCTGACGCGCCGTCGGCGCATCA
GGAACTCGCCGGCTACGCCAGCATTCCCTATCAGCTCGCGGAAGGCGGCCTGGTGGAAAACAAAGACAGCATCAACAGCT
GGAGCGTTTCGGACGCCATCACGCCCAGCCTGTATAGCCTGGATGACTACGATTTTCGCAAGCCGCGCGCGCGGTTGCTG
GAGGCGCGGCAGAATCCCGCCTCGTTCGCGCAGGACAAAGCCGAGGTGTTCGACTGGCCCGGGCGTTATACCGATCACGC
CCACGGCCAGTTTTACGTCAAGGTTCGCCAGCAGGAGTTCGAAGCGCAGCACGAGCAGATGAGCGGCGAAGGCAGTTCGC
AGGGCATTGCGCCCGGCTACCGTTTTCAACTGATCCAGGCGCCGCGTATGGAGGACAACCGCGCCTACCTGGTGGTCAGC
GCGCATTACTTCATGCAGGAAAACAGCTACGCAAGCAATGATAACGACGTCGGCGAGCAGCGTACCGAATTTCAGGTCGT
TCCGGCGGACATCAATTGGCGCCCGGCGCGCATCACGCCCTGGCCGAAAACCCACGGCCCGCAAACTGCCGAAGTGGTGG
GGCCGGAAGGCGAAAGCATCTGGACCGATAAATATGGCCGGGTGAAACTCAAATTCCGTTGGGATCGCCACGGCAGCGGC
AATGAAACCAGTTCCTGTTGGGTGCGCGTCTCCAGCGCCTGGGCCGGCTGGAAATACGGCGGGATCCAGATCCCGCGCGT
GGGCGAAGAAGTGGTGGTCGACTTTATCAACGGCGATCCGGATCGCCCTATCATCACCGGCCGCGTTTACAACGAAGACA
GCATGCCGCCGTGGGATCTGCCCGGCGACGCCACCAAAATGGGCTTTATGAGCCGCAGCAAAGGCGGCGGCGCCGACAAC
GCCAGCTTCCTGTTCCTGGAAGACTCGCCCGGCAACGAATCTTTCGACATGCACGCCGAACGCAACATGAACATGACGGT
GGAAAACGACAAGAACGTCAATATTGACGGCAGCCGCACCACCACCATCGGCCGCAAGCAGGACGACACCGTCACCGGCG
ACGCCACGTTCCTGTACAAAGCGAAACGCACCACCACCGTCGATGGGCTGGAAACCGCCAACCTGAACGCCCACCAGACG
GTGAACATCAAAGGCGGCCGCGACCTGACGATTATCGACGGCGGCGATAAAATCGACATCACCGGCAATCAGTCCTTCAA
GCTTGACGGCGCACAGACGCAAAACATTACGCAGACCCAACACGTCACGGTGAAGGGCAATCAGACCCTCGACATTACCG
AAGGGCAACAAACCAGCACCATCAAGCAAGGGCAAACGGTCAACATCACCTCCGGCGGGCAGCACACCACCATCACCGCC
GGCGGGCAGGAATTGACGGTTAAAGGCGGCGGCCAAACCGCTACCGTCACCGGGAATGTCACCGAGACCTACAAAAACGA
TCAGAGCACGACGATCACCGGTACGCTGACCATCAAAGCGAAAACGATCAACATCACCAGCGCAGACGGCGTGTCGGTGC
AGACACCGAGCTGGAAAGATAACTGCCACGGTTGGAAATGGGTGGCGACCGGGGCCAACTTCGCCTTCTACGGCTCCAAT
CTTGCGTTGACAGGAGCCAGCCTGAAACACACGATGCTGGATATCTCGCACAATCCGCTGGCGATCAGCAAAACCAATTT
CAAGCTCAGTAACGATCCAATGACGTTCACTCAGCTTGGCGCGCTGGTGACCAACGGCGCCTTACGGTTGAGCACCAAGG
CGCTGGCGATCTTTTTATAA