Detailed information of component protein


Summary

Component ID T6CP015756
Component protein type TssJ
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (177 a.a.); Nucleotide sequence (531 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) RT90_RS02725
Coordinate (Strand) 591895..592425 (-)
NCBI ID 913459525
RefSeq NZ_JWLO01000001
Uniprot ID UPI00044D6217
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1e-28 36..148

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-176 MMTTPIASRWCGMLFLLLSALALGGCMSSAKSVPSRYSLVFDADRQVNAAAGAQPAPIKIRVLLLRSDAEFMDADFFSLQNDAKSVLGNSLLDSDQFFLTPGQTGKKLGGQSALDARYIGVIAEYQNLDGKTWRLSLPLPEPTETNFYKVWQFSPDELEAHIVAGVSGLRPVKKVD



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9874 pos: 25-26. LGG-CM. MMTTPIASRWCGMLFLLLSALALGG



  Protein sequence: 177 a.a.    

>T6CP015756 NZ_JWLO01000001:c592425-591895 [Serratia marcescens] [TssJ]
MMTTPIASRWCGMLFLLLSALALGGCMSSAKSVPSRYSLVFDADRQVNAAAGAQPAPIKIRVLLLRSDAEFMDADFFSLQ
NDAKSVLGNSLLDSDQFFLTPGQTGKKLGGQSALDARYIGVIAEYQNLDGKTWRLSLPLPEPTETNFYKVWQFSPDELEA
HIVAGVSGLRPVKKVD*

  Nucleotide sequence: 531 bp    

>T6CP015756 NZ_JWLO01000001:c592425-591895 [Serratia marcescens] [TssJ]
ATGATGACGACCCCTATCGCTTCCCGCTGGTGCGGGATGCTTTTTCTGCTGCTGAGCGCGTTGGCGCTCGGCGGCTGCAT
GTCTTCCGCCAAAAGCGTGCCGTCGCGATACAGCCTGGTGTTCGATGCCGATCGCCAGGTCAACGCCGCCGCCGGCGCGC
AACCGGCGCCGATAAAAATTCGCGTGCTGCTGCTGCGTTCGGATGCGGAATTCATGGATGCCGACTTCTTCAGTCTGCAA
AACGACGCCAAAAGCGTGCTCGGCAACAGCCTGCTGGACAGCGATCAGTTCTTCCTGACGCCGGGCCAGACCGGCAAAAA
ACTCGGTGGGCAAAGCGCGTTGGATGCGCGCTACATCGGCGTGATCGCCGAATATCAAAATCTGGACGGCAAAACCTGGC
GCCTTTCACTGCCGCTGCCGGAACCCACCGAAACCAATTTCTACAAGGTATGGCAATTCTCGCCGGATGAGCTGGAAGCG
CATATCGTCGCGGGCGTGAGTGGCCTGCGCCCCGTAAAAAAGGTCGACTGA