Detailed information of component protein


Summary

Component ID T6CP015755
Component protein type TssK
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02720
Coordinate (Strand) 590508..591854 (-)
NCBI ID 727170789
RefSeq NZ_JWLO01000001
Uniprot ID A0A2S4XGP9_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.3e-149 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MKDAHKVVWTEGMFLRPHHFQQAENYLEGYMRNWGQAHSGCFWGFLTLDLDQTLLRQGKIALNAASGIMPDGTPFRFAGAQQAPAPLTIAENKTGENVVLALPTYRAGREDVIFQESPEALARYLAYENEVDDLNAVSVGSAALQFGRLRLRLMLESELNAEWTALGVTRVLEKRGDNSLRLDTAQIPPMLNCQGNPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQLINRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEGRLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQLTLVERSHGLNVATVQDAKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYHAGYTYFELEKGGDLWKQMEKSSAFALHLAGEFPGLDMEFWAIRSHTDR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9935 - -


  Protein sequence: 449 a.a.    

>T6CP015755 NZ_JWLO01000001:c591854-590508 [Serratia marcescens] [TssK]
MKDAHKVVWTEGMFLRPHHFQQAENYLEGYMRNWGQAHSGCFWGFLTLDLDQTLLRQGKIALNAASGIMPDGTPFRFAGA
QQAPAPLTIAENKTGENVVLALPTYRAGREDVIFQESPEALARYLAYENEVDDLNAVSVGSAALQFGRLRLRLMLESELN
AEWTALGVTRVLEKRGDNSLRLDTAQIPPMLNCQGNPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQL
INRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEGRLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQL
TLVERSHGLNVATVQDAKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYH
AGYTYFELEKGGDLWKQMEKSSAFALHLAGEFPGLDMEFWAIRSHTDR*

  Nucleotide sequence: 1347 bp    

>T6CP015755 NZ_JWLO01000001:c591854-590508 [Serratia marcescens] [TssK]
ATGAAAGATGCTCATAAGGTTGTCTGGACGGAGGGGATGTTTTTGCGCCCCCACCATTTCCAGCAGGCGGAAAACTATCT
CGAAGGCTATATGCGCAACTGGGGCCAGGCCCACAGCGGCTGTTTCTGGGGTTTCCTGACCCTGGATCTGGACCAAACGC
TGCTGCGCCAGGGCAAGATTGCCCTCAACGCCGCCAGCGGCATCATGCCGGACGGCACGCCGTTTCGCTTCGCCGGCGCC
CAGCAGGCGCCCGCGCCGCTGACCATCGCCGAAAACAAGACCGGCGAAAACGTGGTGCTGGCCCTGCCGACCTACCGCGC
GGGGCGTGAAGACGTGATCTTTCAGGAAAGCCCGGAGGCGCTGGCGCGCTATCTGGCTTACGAGAATGAAGTCGACGATC
TCAACGCCGTCTCGGTGGGCAGCGCGGCGCTGCAGTTTGGCCGCCTGCGCCTGCGGCTGATGCTGGAGAGCGAGCTCAAC
GCCGAATGGACGGCGCTCGGCGTGACCCGCGTGCTGGAAAAACGCGGCGACAACAGCCTGCGCCTCGATACCGCGCAGAT
CCCGCCGATGCTGAACTGCCAGGGCAACCCGGTACTGAAAACCTTCATCAACGATCTGCAGGGCCTGCTGCAACAGCGCA
GCCAGCAGATGAGCCAGCGCCTGCTGCAGCCGGGCCGCGGCGGCAGTTCCGAAATGGTCGATTTCATGCTGCTGCAGCTG
ATCAACCGCCACCTCGGCCAGGTGAGCCACGCCTACCACCTCGACCATCTGCACCCGGAGCGCCTGTTCGCCGATTGGCT
GCAGTTCGCCACCGAGCTCGCCAGCTTCTCGGCGCAGCGCACCCCGGAAGGCCGTCTGCCGGTGTATGACCACGACAACC
TGGCGCTGTGCTTCGGCAAGCTGATGCTGTTGCTGCGCCAGGGGCTGTCGGTGGTGCTGGAAGACAACGCCATTCAGCTG
ACGCTGGTCGAACGCTCCCACGGGCTGAACGTCGCCACCGTGCAGGACGCCAAAATGATGCGCGACTTCGGCTTCGTGCT
GGCGGTGCGCGCCGACGTGGCCGCCGAGGTGTTGCTGACCCATTTCCCGGCGCAGATGAAGATCGCCCCGGTCACGCGCA
TCCGCGATTTGGTGCAGCTGCAGCTGCCAGGCATCGGTTTGCGCACCATGCCCGCCGCGCCGCGCCAGATCCCCTATCAC
GCCGGCTACACCTACTTCGAGCTGGAAAAAGGCGGCGACCTGTGGAAACAGATGGAAAAATCCAGCGCCTTCGCTCTGCA
CCTGGCGGGCGAATTCCCGGGGCTGGACATGGAATTTTGGGCGATTCGCAGCCATACGGACCGGTAA