Detailed information of component protein


Summary

Component ID T6CP015754
Component protein type TssL
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (401 a.a.); Nucleotide sequence (1203 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02715
Coordinate (Strand) 589284..590486 (-)
NCBI ID 896288904
RefSeq NZ_JWLO01000001
Uniprot ID A0A0J5CVK8_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 2.7e-68 7..209
OmpA PF00691.22 8.4e-15 276..374
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-185 MAPAANPLVDAANPLLNAISQIRQSATHANPAQLRQQLIDEMRRFEIRGQRANLPYEVIIGARYCLCTALDEAAALTPWGSNSVWSGSGLLVTFHNETWGGEKFFQLLAKLSQSPREHINLLELINYCLLLGFEGRYRVMENGRSQLETMKQRLLQLIRSVRGGYAPPLSPHALDLPVQQKLWRP
Transmembrane helix 186-208 LVPLWACVALTGFLASLLFIALN
Inside 209-400 WRLGDNTSPVLAAIYQTNLPQVAIGNPAPAAPPTLSLKSFLRKEIAEGLVVVRDEAQQSVVILKGDGLFDSAATTVRANYIPVIDRIAAAMNGVSGKILVTGYSDNVPIRSARFASNWELSLARAEAVSARLQKHLANPQRVKAEGRGESNPVAPNDNKVNRALNRRVEITLLVAPENTQAEINGLPQGTGK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9391 - -


  Protein sequence: 401 a.a.    

>T6CP015754 NZ_JWLO01000001:c590486-589284 [Serratia marcescens] [TssL]
MAPAANPLVDAANPLLNAISQIRQSATHANPAQLRQQLIDEMRRFEIRGQRANLPYEVIIGARYCLCTALDEAAALTPWG
SNSVWSGSGLLVTFHNETWGGEKFFQLLAKLSQSPREHINLLELINYCLLLGFEGRYRVMENGRSQLETMKQRLLQLIRS
VRGGYAPPLSPHALDLPVQQKLWRPLVPLWACVALTGFLASLLFIALNWRLGDNTSPVLAAIYQTNLPQVAIGNPAPAAP
PTLSLKSFLRKEIAEGLVVVRDEAQQSVVILKGDGLFDSAATTVRANYIPVIDRIAAAMNGVSGKILVTGYSDNVPIRSA
RFASNWELSLARAEAVSARLQKHLANPQRVKAEGRGESNPVAPNDNKVNRALNRRVEITLLVAPENTQAEINGLPQGTGK
*

  Nucleotide sequence: 1203 bp    

>T6CP015754 NZ_JWLO01000001:c590486-589284 [Serratia marcescens] [TssL]
ATGGCGCCGGCGGCCAACCCGCTGGTGGACGCCGCCAACCCGCTGCTGAACGCCATTTCGCAGATCCGCCAGTCGGCCAC
GCACGCCAACCCGGCGCAGCTGCGCCAACAGCTGATCGACGAAATGCGCCGCTTCGAGATCCGCGGCCAACGCGCCAACC
TGCCGTACGAGGTGATCATCGGCGCGCGTTATTGCCTGTGCACCGCGCTGGATGAAGCGGCGGCGCTGACCCCGTGGGGC
AGCAACAGCGTGTGGTCCGGCAGCGGGCTGCTGGTGACCTTCCATAACGAAACCTGGGGCGGCGAGAAATTCTTCCAGCT
GCTGGCCAAGCTGTCGCAAAGCCCGCGCGAGCACATCAACCTGCTGGAGCTGATCAATTATTGCCTGCTGCTGGGCTTTG
AAGGCCGCTACCGGGTGATGGAAAACGGCCGCTCGCAGCTGGAAACCATGAAGCAGCGCCTGCTGCAGCTGATCCGGTCG
GTGCGCGGCGGCTATGCCCCGCCGCTGTCGCCCCATGCGCTGGATCTGCCGGTACAGCAGAAACTGTGGCGCCCGCTGGT
GCCGCTGTGGGCCTGCGTGGCGCTGACCGGCTTCCTGGCTTCGCTGCTGTTCATCGCCCTCAACTGGCGGCTGGGCGACA
ACACCAGCCCGGTGCTGGCGGCGATTTACCAAACCAATCTGCCGCAGGTGGCGATCGGTAACCCGGCGCCGGCCGCACCG
CCGACGCTGAGCCTGAAAAGCTTCCTGCGCAAAGAGATCGCCGAAGGGCTGGTGGTGGTGCGCGACGAAGCGCAGCAAAG
CGTGGTAATCCTCAAAGGCGACGGGCTGTTCGACTCCGCCGCCACCACGGTGCGCGCCAACTATATTCCGGTTATCGACC
GCATCGCCGCCGCCATGAACGGCGTCAGCGGCAAAATCCTGGTCACCGGCTACAGCGACAACGTGCCGATCCGCAGCGCC
CGTTTCGCCTCCAACTGGGAGCTGTCGCTGGCGCGCGCCGAAGCGGTCAGCGCCCGGTTGCAAAAGCACCTCGCCAACCC
GCAGCGTGTCAAGGCCGAGGGCCGCGGCGAGAGCAATCCCGTCGCGCCGAACGATAACAAAGTGAACCGCGCGTTGAACC
GCCGGGTAGAAATTACGCTGTTGGTCGCCCCGGAAAATACCCAGGCGGAAATCAACGGCTTGCCGCAAGGAACCGGAAAG
TAA