Detailed information of component protein


Summary

Component ID T6CP015753
Component protein type TssM
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (1212 a.a.); Nucleotide sequence (3636 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02710
Coordinate (Strand) 585649..589284 (-)
NCBI ID 727185935
RefSeq NZ_JWLO01000001
Uniprot ID UPI00044F368E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.1e-95 210..484
IcmF-related PF06761.14 5.2e-85 536..840
IcmF_C PF06744.14 3.8e-22 1095..1197
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MLSTLFSIITSR
Transmembrane helix 13-35 LLWGFVGITALAFIIWMIGPLVA
Outside 36-49 IGDYRPLEPELNRQ
Transmembrane helix 50-72 IAIGVIYLIWFLCRLIPRLYSAW
Inside 73-475 FNSRLLSNLRAAEAVPAEDGKPEVKQDDQLAQRFDEAAQLLKKARFTPGQGDGKHRWMTRFSRQYLYQLPWYVIIGAPGAGKTTALVNSGLHFPLADRFGKSALRGVGGTRNCDWWFTNDAVLLDTAGRYTTQESQREEDAGEWQSFVALLKKYRTRQPINGVMVTISVADLLSDSAEARAAQASALRKRLIELHEQLGIHFPVYVLVTKTDLLNGFMAYFGSFDKAQRDQIWGFTFPYERSRQPDFNLNAAFEQQYALLQQRLDAALPDTLLMEHDARQRAESYLFPQEFAALRPLLGQYLEQVFATSSFETRFTPRGIYFTSGTQEGLPFDRVMGELNRYLQLPTANSGAQANAAWDSVGQEAPIPAAKGQSFFLKETLESVVFQESGLAGSNRWWEYRNR
Transmembrane helix 476-498 ALHWAGYIALAVILAVLAMLWFT
Outside 499-1211 SYGNNKAYLAEVAAKVPGVERQGQNLTQLGNGDMFSLLPFLNSLLHLPDSQNFSLDDPPFTYRMGLFRGDQVSDAGNALYQKALKELLLPQVAQQIATTLRNDNHGDADFSYEALKAYQMLYLPKQYDGKFLRAWVMLNLQRNLPQGSTQKQLQQIEWHLGQLLDAQIQASPYAKDDPLVAQAQAAINRAPLSQRVYGRLKRLLLKQTDIKPVSLVDLAGPQTELAFSRKSGKPVTDGVPGLFTSQGYWKAFNDNIDPVTDTLRKEDVWVLNSQTPEQKSADLTKTIRQLYMQDFISAWDELLGDIQLANIGNLTQRISSARLLSGNPSPMRNLLVNVSKNVTLRDEKSDADSRSLLAKTEDRLNQNANRTLEALFTNRPANADGDVSAQPEQLVMAHFAPLLELAQSQGEGNKAIPFDSVLKQVDELYSYLTAVQGAANSGMSAPPSDIIPRLQAESGRLPVPFKQMLLSLAIGASSDTQRKEMENVKKRISFEVGSFCRQAIAGRYPLVARARQEVTPDDLARMFAPNSGLMDSFFRDNLQGKVDTTRANWRFTPGVDGKTLPGGEGILRSFQQAQRIRDAFFANGTATPSYRVTVRPVRMDNDILNLTLDIDGQLFKYSHGPQVPLVVSWPGTRNTNQVHLQLALANGTTASLVTSGPWALNRLVDMAQSSGTGGLGRQATFNLDGHRVTLEFTPNSIRNPFQLPAFSCP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9970 - -


  Protein sequence: 1212 a.a.    

>T6CP015753 NZ_JWLO01000001:c589284-585649 [Serratia marcescens] [TssM]
MLSTLFSIITSRLLWGFVGITALAFIIWMIGPLVAIGDYRPLEPELNRQIAIGVIYLIWFLCRLIPRLYSAWFNSRLLSN
LRAAEAVPAEDGKPEVKQDDQLAQRFDEAAQLLKKARFTPGQGDGKHRWMTRFSRQYLYQLPWYVIIGAPGAGKTTALVN
SGLHFPLADRFGKSALRGVGGTRNCDWWFTNDAVLLDTAGRYTTQESQREEDAGEWQSFVALLKKYRTRQPINGVMVTIS
VADLLSDSAEARAAQASALRKRLIELHEQLGIHFPVYVLVTKTDLLNGFMAYFGSFDKAQRDQIWGFTFPYERSRQPDFN
LNAAFEQQYALLQQRLDAALPDTLLMEHDARQRAESYLFPQEFAALRPLLGQYLEQVFATSSFETRFTPRGIYFTSGTQE
GLPFDRVMGELNRYLQLPTANSGAQANAAWDSVGQEAPIPAAKGQSFFLKETLESVVFQESGLAGSNRWWEYRNRALHWA
GYIALAVILAVLAMLWFTSYGNNKAYLAEVAAKVPGVERQGQNLTQLGNGDMFSLLPFLNSLLHLPDSQNFSLDDPPFTY
RMGLFRGDQVSDAGNALYQKALKELLLPQVAQQIATTLRNDNHGDADFSYEALKAYQMLYLPKQYDGKFLRAWVMLNLQR
NLPQGSTQKQLQQIEWHLGQLLDAQIQASPYAKDDPLVAQAQAAINRAPLSQRVYGRLKRLLLKQTDIKPVSLVDLAGPQ
TELAFSRKSGKPVTDGVPGLFTSQGYWKAFNDNIDPVTDTLRKEDVWVLNSQTPEQKSADLTKTIRQLYMQDFISAWDEL
LGDIQLANIGNLTQRISSARLLSGNPSPMRNLLVNVSKNVTLRDEKSDADSRSLLAKTEDRLNQNANRTLEALFTNRPAN
ADGDVSAQPEQLVMAHFAPLLELAQSQGEGNKAIPFDSVLKQVDELYSYLTAVQGAANSGMSAPPSDIIPRLQAESGRLP
VPFKQMLLSLAIGASSDTQRKEMENVKKRISFEVGSFCRQAIAGRYPLVARARQEVTPDDLARMFAPNSGLMDSFFRDNL
QGKVDTTRANWRFTPGVDGKTLPGGEGILRSFQQAQRIRDAFFANGTATPSYRVTVRPVRMDNDILNLTLDIDGQLFKYS
HGPQVPLVVSWPGTRNTNQVHLQLALANGTTASLVTSGPWALNRLVDMAQSSGTGGLGRQATFNLDGHRVTLEFTPNSIR
NPFQLPAFSCP*

  Nucleotide sequence: 3636 bp    

>T6CP015753 NZ_JWLO01000001:c589284-585649 [Serratia marcescens] [TssM]
ATGCTCAGTACGTTATTCTCCATCATCACCAGCCGCCTGCTGTGGGGCTTTGTCGGCATTACCGCGCTGGCGTTCATCAT
CTGGATGATCGGCCCGCTGGTGGCCATCGGCGACTATCGCCCGCTGGAGCCGGAACTCAACCGCCAGATCGCCATCGGCG
TTATCTACCTGATCTGGTTCCTGTGCCGCCTGATCCCGCGCCTCTACAGCGCCTGGTTCAACAGCCGCCTGCTGAGCAAC
CTGCGCGCCGCCGAAGCGGTGCCGGCGGAAGACGGCAAGCCCGAGGTCAAACAAGACGATCAGTTGGCGCAGCGCTTCGA
CGAAGCGGCGCAGCTGCTGAAAAAGGCGCGCTTCACACCGGGCCAGGGCGACGGCAAACACCGCTGGATGACCCGCTTTA
GCCGCCAGTACCTGTACCAGCTGCCGTGGTATGTGATCATCGGCGCGCCCGGCGCCGGCAAGACCACCGCGCTGGTCAAC
TCCGGCCTGCACTTCCCGCTGGCGGATCGCTTCGGCAAATCCGCGCTGCGCGGCGTGGGCGGCACCCGCAACTGCGACTG
GTGGTTTACCAACGACGCCGTGCTGCTCGACACCGCCGGCCGCTACACCACGCAGGAAAGCCAGCGCGAAGAAGACGCCG
GCGAGTGGCAAAGCTTCGTCGCGCTGCTGAAAAAATACCGCACCCGTCAGCCGATCAACGGCGTGATGGTGACCATCAGC
GTCGCCGATCTGCTGAGCGACAGCGCCGAAGCGCGCGCCGCCCAGGCCAGCGCGCTGCGCAAACGCCTGATCGAACTGCA
CGAACAGCTGGGCATTCACTTCCCGGTCTATGTGCTGGTCACCAAAACCGACCTGCTCAACGGCTTTATGGCCTACTTCG
GCAGCTTCGACAAAGCACAGCGCGACCAGATCTGGGGGTTCACCTTCCCTTACGAGCGCTCGCGGCAGCCGGACTTCAAC
CTGAACGCCGCTTTCGAACAGCAATACGCCCTGCTGCAACAGCGGCTGGACGCGGCGCTGCCTGATACGCTGCTGATGGA
GCACGACGCGCGCCAGCGCGCCGAAAGCTACCTGTTCCCGCAGGAGTTCGCCGCGCTGCGCCCGCTGCTCGGCCAATACC
TGGAGCAGGTGTTCGCCACCTCCAGTTTTGAAACCCGCTTTACCCCGCGCGGCATCTATTTCACCAGCGGCACGCAGGAA
GGCCTGCCGTTCGACCGGGTGATGGGCGAGCTGAACCGCTATCTGCAGCTGCCGACGGCAAACTCAGGGGCGCAGGCCAA
CGCGGCCTGGGACAGCGTGGGCCAGGAAGCGCCAATCCCGGCGGCCAAGGGCCAAAGCTTCTTCCTGAAAGAGACGTTGG
AATCGGTGGTCTTCCAGGAATCCGGGCTGGCGGGCAGCAACCGCTGGTGGGAATACCGCAACCGCGCCCTGCACTGGGCG
GGTTACATCGCGCTGGCGGTGATCCTGGCGGTGCTGGCGATGCTCTGGTTCACCAGCTACGGCAACAACAAGGCCTATCT
GGCGGAAGTGGCCGCCAAGGTGCCCGGCGTCGAGCGCCAGGGGCAAAACCTGACGCAGTTGGGCAACGGCGACATGTTCT
CGCTGCTGCCGTTCCTCAACAGCCTGCTGCACCTGCCGGACAGCCAGAACTTTTCGCTGGACGATCCGCCGTTCACCTAC
CGCATGGGGCTGTTCCGCGGCGATCAGGTGAGCGACGCCGGCAATGCGCTGTACCAAAAAGCTCTGAAAGAGCTGCTGCT
GCCGCAGGTGGCGCAACAGATCGCCACCACGCTGCGCAACGACAACCACGGCGATGCGGACTTCAGCTACGAAGCGCTGA
AGGCCTACCAGATGCTGTATCTGCCGAAGCAGTACGACGGCAAATTCCTGCGCGCCTGGGTGATGCTCAACCTGCAGCGC
AACCTGCCGCAGGGCAGCACCCAGAAACAGCTGCAGCAGATCGAATGGCATTTGGGCCAGCTGCTGGATGCGCAGATCCA
GGCCTCGCCTTACGCCAAAGACGACCCGCTGGTGGCGCAGGCGCAGGCCGCCATCAACCGGGCGCCGCTGTCGCAGCGCG
TCTACGGCCGCCTCAAGCGCCTGCTGCTGAAGCAGACCGACATCAAGCCGGTCAGCCTGGTCGATTTGGCCGGCCCGCAG
ACCGAGCTGGCGTTCAGCCGCAAAAGCGGCAAACCGGTGACCGACGGCGTGCCGGGCCTGTTTACCTCGCAGGGGTATTG
GAAAGCGTTCAACGACAACATCGATCCGGTGACCGACACCCTGCGCAAGGAAGACGTCTGGGTGTTGAACAGCCAGACGC
CGGAGCAGAAGAGCGCTGATTTGACCAAAACCATCCGCCAGCTGTACATGCAGGACTTCATCAGCGCCTGGGATGAGCTG
CTGGGGGATATCCAACTGGCCAACATCGGCAACCTGACCCAGCGCATCAGCAGCGCGCGCCTGCTGTCCGGCAACCCGTC
GCCGATGCGTAACCTGCTGGTCAACGTCAGCAAAAACGTCACCCTGCGCGACGAGAAAAGCGACGCCGACTCCCGCTCGC
TGCTGGCCAAAACCGAAGACAGACTGAATCAAAACGCCAACCGCACGCTGGAAGCGCTGTTCACCAACCGGCCGGCCAAC
GCCGACGGCGACGTATCCGCCCAGCCGGAACAGCTGGTGATGGCGCACTTCGCGCCGCTGCTGGAGCTAGCGCAAAGCCA
GGGCGAAGGCAATAAGGCGATCCCTTTCGACAGCGTGCTCAAGCAGGTCGATGAGCTGTACAGCTATCTGACGGCGGTTC
AGGGCGCGGCCAACAGCGGCATGTCGGCGCCACCGAGCGACATCATCCCGCGTCTGCAGGCCGAATCCGGCCGCTTGCCG
GTGCCGTTCAAACAGATGCTGCTGTCGCTGGCGATCGGCGCCAGCAGCGACACCCAGCGCAAAGAGATGGAGAACGTGAA
AAAGCGCATCAGCTTCGAGGTCGGCAGTTTCTGCCGCCAGGCGATCGCCGGCCGTTATCCGCTGGTGGCACGGGCGCGCC
AGGAAGTGACGCCGGACGATCTGGCGCGCATGTTCGCGCCGAACAGCGGGCTGATGGACAGCTTCTTCCGCGACAACCTG
CAGGGCAAGGTCGACACCACCCGCGCCAACTGGCGCTTTACCCCTGGCGTGGACGGCAAGACGCTGCCCGGCGGCGAAGG
CATCCTGCGTTCCTTCCAGCAGGCGCAGCGCATCCGCGACGCCTTCTTCGCCAACGGTACCGCGACGCCCTCTTACCGCG
TGACCGTGCGGCCGGTGCGGATGGATAACGATATCCTCAACCTGACGCTGGATATCGACGGCCAGCTGTTCAAATACAGC
CACGGCCCACAGGTGCCGCTGGTGGTCAGTTGGCCGGGCACCCGCAATACCAACCAGGTGCATTTGCAGCTGGCGCTGGC
CAACGGCACCACCGCCAGCCTGGTGACCAGCGGGCCGTGGGCGCTGAACCGCCTGGTAGACATGGCGCAATCTTCGGGCA
CCGGCGGCCTCGGCCGCCAGGCGACCTTCAATCTCGACGGCCACCGCGTCACGCTGGAGTTCACGCCCAACAGCATTCGC
AATCCGTTCCAACTGCCGGCCTTCTCGTGCCCGTAG