Detailed information of component protein
Summary
| Component ID | T6CP015752 |
| Component protein type | TagF |
| T6SS ID (Type) | T6SS01264  (Type i3) |
| Strain | Serratia marcescens RM66262 |
| Replicon | chromosome |
| Sequence | Protein sequence (240 a.a.); Nucleotide sequence (720 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | RT90_RS02705 |
| Coordinate (Strand) | 584911..585630 (-) |
| NCBI ID | 727185937 |
| RefSeq | NZ_JWLO01000001 |
| Uniprot ID | A0A2S4XAU5_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TagF_N | PF09867.11 | 9.8e-40 | 12..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-239 | MSTDSSAPTSIGWYGKLPSAGDFLQRRLPDPVVNNWAHWFHNGLVNLQRDAQGPNGHPFSNAPVWNFVIPATLGSPYVQMGCLLPARDRVGRRYPICALRLFSQQDWRPQQLNMAASWYQQLGYTLLNGVRNGFSAEQIDRTLQAIPALPSPPAEADSEILSIIGFQHPDVPGLGWQQAADCFDPAQYTSFWWTNQADGHPLYTHVHSGNLTVQLFSLLFEPNGWARPGRGGQYPQMFD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9784 | - | - |
Protein sequence: 240 a.a.
>T6CP015752 NZ_JWLO01000001:c585630-584911 [Serratia marcescens] [TagF]
MSTDSSAPTSIGWYGKLPSAGDFLQRRLPDPVVNNWAHWFHNGLVNLQRDAQGPNGHPFSNAPVWNFVIPATLGSPYVQM
GCLLPARDRVGRRYPICALRLFSQQDWRPQQLNMAASWYQQLGYTLLNGVRNGFSAEQIDRTLQAIPALPSPPAEADSEI
LSIIGFQHPDVPGLGWQQAADCFDPAQYTSFWWTNQADGHPLYTHVHSGNLTVQLFSLLFEPNGWARPGRGGQYPQMFD*
MSTDSSAPTSIGWYGKLPSAGDFLQRRLPDPVVNNWAHWFHNGLVNLQRDAQGPNGHPFSNAPVWNFVIPATLGSPYVQM
GCLLPARDRVGRRYPICALRLFSQQDWRPQQLNMAASWYQQLGYTLLNGVRNGFSAEQIDRTLQAIPALPSPPAEADSEI
LSIIGFQHPDVPGLGWQQAADCFDPAQYTSFWWTNQADGHPLYTHVHSGNLTVQLFSLLFEPNGWARPGRGGQYPQMFD*
Nucleotide sequence: 720 bp
>T6CP015752 NZ_JWLO01000001:c585630-584911 [Serratia marcescens] [TagF]
ATGAGCACTGATTCAAGCGCCCCGACGAGCATCGGCTGGTACGGCAAACTCCCTTCCGCCGGCGACTTCCTGCAACGCCG
CCTGCCCGATCCGGTGGTCAACAACTGGGCCCACTGGTTCCATAACGGGCTGGTGAATTTGCAGCGCGATGCGCAGGGGC
CGAACGGCCACCCGTTCAGCAACGCACCGGTGTGGAACTTCGTGATCCCCGCCACGCTCGGCAGCCCGTACGTGCAGATG
GGTTGCCTGTTGCCAGCGCGCGATCGCGTCGGGCGACGCTACCCGATCTGCGCGCTGCGCCTGTTCAGCCAACAGGATTG
GCGGCCGCAACAGCTGAACATGGCGGCGAGCTGGTACCAACAGCTCGGTTATACCCTGCTGAACGGCGTGCGCAACGGTT
TCTCCGCCGAGCAGATCGACCGCACGTTGCAGGCGATCCCGGCACTGCCCAGCCCGCCGGCGGAAGCAGATTCCGAGATA
TTGTCGATTATCGGTTTCCAGCATCCGGACGTGCCGGGCCTCGGCTGGCAACAGGCCGCCGACTGTTTCGACCCGGCGCA
GTACACCAGTTTCTGGTGGACCAATCAGGCCGACGGACACCCGCTCTACACCCACGTGCACAGCGGCAACCTCACCGTGC
AGCTGTTTTCACTGCTGTTCGAGCCCAACGGCTGGGCGCGCCCCGGCCGCGGCGGCCAGTACCCGCAAATGTTTGATTAA
ATGAGCACTGATTCAAGCGCCCCGACGAGCATCGGCTGGTACGGCAAACTCCCTTCCGCCGGCGACTTCCTGCAACGCCG
CCTGCCCGATCCGGTGGTCAACAACTGGGCCCACTGGTTCCATAACGGGCTGGTGAATTTGCAGCGCGATGCGCAGGGGC
CGAACGGCCACCCGTTCAGCAACGCACCGGTGTGGAACTTCGTGATCCCCGCCACGCTCGGCAGCCCGTACGTGCAGATG
GGTTGCCTGTTGCCAGCGCGCGATCGCGTCGGGCGACGCTACCCGATCTGCGCGCTGCGCCTGTTCAGCCAACAGGATTG
GCGGCCGCAACAGCTGAACATGGCGGCGAGCTGGTACCAACAGCTCGGTTATACCCTGCTGAACGGCGTGCGCAACGGTT
TCTCCGCCGAGCAGATCGACCGCACGTTGCAGGCGATCCCGGCACTGCCCAGCCCGCCGGCGGAAGCAGATTCCGAGATA
TTGTCGATTATCGGTTTCCAGCATCCGGACGTGCCGGGCCTCGGCTGGCAACAGGCCGCCGACTGTTTCGACCCGGCGCA
GTACACCAGTTTCTGGTGGACCAATCAGGCCGACGGACACCCGCTCTACACCCACGTGCACAGCGGCAACCTCACCGTGC
AGCTGTTTTCACTGCTGTTCGAGCCCAACGGCTGGGCGCGCCCCGGCCGCGGCGGCCAGTACCCGCAAATGTTTGATTAA