Detailed information of component protein
Summary
| Component ID | T6CP015751 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS01264  (Type i3) |
| Strain | Serratia marcescens RM66262 |
| Replicon | chromosome |
| Sequence | Protein sequence (344 a.a.); Nucleotide sequence (1032 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | RT90_RS02700 |
| Coordinate (Strand) | 583856..584887 (-) |
| NCBI ID | 727191850 |
| RefSeq | NZ_JWLO01000001 |
| Uniprot ID | UPI0004E42921 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpA_N | PF06812.14 | 7e-38 | 9..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-343 | MAIDTDTLLTPVDADNPCGDNLEYDADFLAMEQAATGKAEQQFGSTIIPEEAPDWVQVERLATSLLTRTKDLRVMLYLTRAWTQLRGLPGYADGLTLIHQSMARYWDALQPPLEFDGEADPLFRINALADLGDKAALAASVRAAPLLKSAAGEISLRDAGALLDGSKQECPNFPGGRARLQDELAQQDRPEGALVARIANTLSAIRGEVTRHLGESALPEMSALTKVFSLVALAGQSEAPAAAEPDAPPEAAAVQPPAAVQSATAPLNWRSAQIQSRDDAQLMLDKVKNYFRLHEPSHPAPLMIDRVQRLITLDFMQIVRDLAPDGLNQLETILGRPDNEENS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9904 | - | - |
Protein sequence: 344 a.a.
>T6CP015751 NZ_JWLO01000001:c584887-583856 [Serratia marcescens] [TssA]
MAIDTDTLLTPVDADNPCGDNLEYDADFLAMEQAATGKAEQQFGSTIIPEEAPDWVQVERLATSLLTRTKDLRVMLYLTR
AWTQLRGLPGYADGLTLIHQSMARYWDALQPPLEFDGEADPLFRINALADLGDKAALAASVRAAPLLKSAAGEISLRDAG
ALLDGSKQECPNFPGGRARLQDELAQQDRPEGALVARIANTLSAIRGEVTRHLGESALPEMSALTKVFSLVALAGQSEAP
AAAEPDAPPEAAAVQPPAAVQSATAPLNWRSAQIQSRDDAQLMLDKVKNYFRLHEPSHPAPLMIDRVQRLITLDFMQIVR
DLAPDGLNQLETILGRPDNEENS*
MAIDTDTLLTPVDADNPCGDNLEYDADFLAMEQAATGKAEQQFGSTIIPEEAPDWVQVERLATSLLTRTKDLRVMLYLTR
AWTQLRGLPGYADGLTLIHQSMARYWDALQPPLEFDGEADPLFRINALADLGDKAALAASVRAAPLLKSAAGEISLRDAG
ALLDGSKQECPNFPGGRARLQDELAQQDRPEGALVARIANTLSAIRGEVTRHLGESALPEMSALTKVFSLVALAGQSEAP
AAAEPDAPPEAAAVQPPAAVQSATAPLNWRSAQIQSRDDAQLMLDKVKNYFRLHEPSHPAPLMIDRVQRLITLDFMQIVR
DLAPDGLNQLETILGRPDNEENS*
Nucleotide sequence: 1032 bp
>T6CP015751 NZ_JWLO01000001:c584887-583856 [Serratia marcescens] [TssA]
ATGGCTATCGACACCGATACCCTGCTGACCCCGGTCGACGCGGACAATCCCTGCGGCGACAACCTGGAATACGACGCCGA
CTTTCTGGCGATGGAACAAGCCGCCACCGGCAAGGCCGAACAACAGTTCGGCAGCACCATCATCCCGGAAGAAGCGCCGG
ATTGGGTGCAGGTCGAACGCCTCGCGACCTCGCTGCTGACGCGCACCAAAGACCTGCGCGTCATGCTGTATCTCACCCGC
GCCTGGACCCAGCTGCGCGGGTTGCCGGGCTACGCCGACGGGCTGACGCTGATCCACCAGTCGATGGCCCGTTACTGGGA
CGCCCTGCAGCCGCCGCTGGAGTTCGACGGCGAGGCCGACCCACTGTTTCGCATCAACGCGCTGGCCGACCTTGGCGACA
AAGCCGCGCTGGCCGCCAGCGTGCGCGCCGCGCCGCTGCTGAAAAGCGCCGCCGGTGAAATCTCGCTGCGCGATGCCGGC
GCCCTGCTCGACGGCAGCAAGCAGGAGTGCCCCAACTTTCCCGGCGGCCGCGCACGGCTGCAGGATGAGCTGGCGCAACA
GGATCGCCCCGAAGGCGCCCTGGTGGCGCGCATCGCCAATACCCTGAGCGCCATTCGCGGCGAAGTGACCCGCCATCTGG
GAGAAAGCGCACTGCCGGAAATGAGCGCGCTGACCAAGGTCTTTTCGCTGGTGGCGCTCGCCGGCCAGAGCGAGGCCCCG
GCCGCCGCCGAACCCGACGCCCCGCCGGAAGCCGCCGCCGTGCAGCCACCCGCCGCCGTGCAGAGCGCCACCGCCCCGCT
CAACTGGCGCAGCGCGCAGATCCAGTCGCGCGACGACGCCCAGCTGATGCTGGACAAGGTGAAAAACTATTTTCGTCTTC
ATGAGCCGAGCCACCCGGCGCCGCTGATGATCGATCGGGTCCAGCGGTTGATTACGCTGGACTTTATGCAAATCGTCCGC
GATTTGGCGCCCGATGGGCTTAACCAACTGGAGACCATTCTCGGTCGCCCCGACAACGAGGAGAACAGCTAG
ATGGCTATCGACACCGATACCCTGCTGACCCCGGTCGACGCGGACAATCCCTGCGGCGACAACCTGGAATACGACGCCGA
CTTTCTGGCGATGGAACAAGCCGCCACCGGCAAGGCCGAACAACAGTTCGGCAGCACCATCATCCCGGAAGAAGCGCCGG
ATTGGGTGCAGGTCGAACGCCTCGCGACCTCGCTGCTGACGCGCACCAAAGACCTGCGCGTCATGCTGTATCTCACCCGC
GCCTGGACCCAGCTGCGCGGGTTGCCGGGCTACGCCGACGGGCTGACGCTGATCCACCAGTCGATGGCCCGTTACTGGGA
CGCCCTGCAGCCGCCGCTGGAGTTCGACGGCGAGGCCGACCCACTGTTTCGCATCAACGCGCTGGCCGACCTTGGCGACA
AAGCCGCGCTGGCCGCCAGCGTGCGCGCCGCGCCGCTGCTGAAAAGCGCCGCCGGTGAAATCTCGCTGCGCGATGCCGGC
GCCCTGCTCGACGGCAGCAAGCAGGAGTGCCCCAACTTTCCCGGCGGCCGCGCACGGCTGCAGGATGAGCTGGCGCAACA
GGATCGCCCCGAAGGCGCCCTGGTGGCGCGCATCGCCAATACCCTGAGCGCCATTCGCGGCGAAGTGACCCGCCATCTGG
GAGAAAGCGCACTGCCGGAAATGAGCGCGCTGACCAAGGTCTTTTCGCTGGTGGCGCTCGCCGGCCAGAGCGAGGCCCCG
GCCGCCGCCGAACCCGACGCCCCGCCGGAAGCCGCCGCCGTGCAGCCACCCGCCGCCGTGCAGAGCGCCACCGCCCCGCT
CAACTGGCGCAGCGCGCAGATCCAGTCGCGCGACGACGCCCAGCTGATGCTGGACAAGGTGAAAAACTATTTTCGTCTTC
ATGAGCCGAGCCACCCGGCGCCGCTGATGATCGATCGGGTCCAGCGGTTGATTACGCTGGACTTTATGCAAATCGTCCGC
GATTTGGCGCCCGATGGGCTTAACCAACTGGAGACCATTCTCGGTCGCCCCGACAACGAGGAGAACAGCTAG