Detailed information of component protein


Summary

Component ID T6CP015751
Component protein type TssA
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (344 a.a.); Nucleotide sequence (1032 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) RT90_RS02700
Coordinate (Strand) 583856..584887 (-)
NCBI ID 727191850
RefSeq NZ_JWLO01000001
Uniprot ID UPI0004E42921
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 7e-38 9..131

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-343 MAIDTDTLLTPVDADNPCGDNLEYDADFLAMEQAATGKAEQQFGSTIIPEEAPDWVQVERLATSLLTRTKDLRVMLYLTRAWTQLRGLPGYADGLTLIHQSMARYWDALQPPLEFDGEADPLFRINALADLGDKAALAASVRAAPLLKSAAGEISLRDAGALLDGSKQECPNFPGGRARLQDELAQQDRPEGALVARIANTLSAIRGEVTRHLGESALPEMSALTKVFSLVALAGQSEAPAAAEPDAPPEAAAVQPPAAVQSATAPLNWRSAQIQSRDDAQLMLDKVKNYFRLHEPSHPAPLMIDRVQRLITLDFMQIVRDLAPDGLNQLETILGRPDNEENS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9904 - -



  Protein sequence: 344 a.a.    

>T6CP015751 NZ_JWLO01000001:c584887-583856 [Serratia marcescens] [TssA]
MAIDTDTLLTPVDADNPCGDNLEYDADFLAMEQAATGKAEQQFGSTIIPEEAPDWVQVERLATSLLTRTKDLRVMLYLTR
AWTQLRGLPGYADGLTLIHQSMARYWDALQPPLEFDGEADPLFRINALADLGDKAALAASVRAAPLLKSAAGEISLRDAG
ALLDGSKQECPNFPGGRARLQDELAQQDRPEGALVARIANTLSAIRGEVTRHLGESALPEMSALTKVFSLVALAGQSEAP
AAAEPDAPPEAAAVQPPAAVQSATAPLNWRSAQIQSRDDAQLMLDKVKNYFRLHEPSHPAPLMIDRVQRLITLDFMQIVR
DLAPDGLNQLETILGRPDNEENS*

  Nucleotide sequence: 1032 bp    

>T6CP015751 NZ_JWLO01000001:c584887-583856 [Serratia marcescens] [TssA]
ATGGCTATCGACACCGATACCCTGCTGACCCCGGTCGACGCGGACAATCCCTGCGGCGACAACCTGGAATACGACGCCGA
CTTTCTGGCGATGGAACAAGCCGCCACCGGCAAGGCCGAACAACAGTTCGGCAGCACCATCATCCCGGAAGAAGCGCCGG
ATTGGGTGCAGGTCGAACGCCTCGCGACCTCGCTGCTGACGCGCACCAAAGACCTGCGCGTCATGCTGTATCTCACCCGC
GCCTGGACCCAGCTGCGCGGGTTGCCGGGCTACGCCGACGGGCTGACGCTGATCCACCAGTCGATGGCCCGTTACTGGGA
CGCCCTGCAGCCGCCGCTGGAGTTCGACGGCGAGGCCGACCCACTGTTTCGCATCAACGCGCTGGCCGACCTTGGCGACA
AAGCCGCGCTGGCCGCCAGCGTGCGCGCCGCGCCGCTGCTGAAAAGCGCCGCCGGTGAAATCTCGCTGCGCGATGCCGGC
GCCCTGCTCGACGGCAGCAAGCAGGAGTGCCCCAACTTTCCCGGCGGCCGCGCACGGCTGCAGGATGAGCTGGCGCAACA
GGATCGCCCCGAAGGCGCCCTGGTGGCGCGCATCGCCAATACCCTGAGCGCCATTCGCGGCGAAGTGACCCGCCATCTGG
GAGAAAGCGCACTGCCGGAAATGAGCGCGCTGACCAAGGTCTTTTCGCTGGTGGCGCTCGCCGGCCAGAGCGAGGCCCCG
GCCGCCGCCGAACCCGACGCCCCGCCGGAAGCCGCCGCCGTGCAGCCACCCGCCGCCGTGCAGAGCGCCACCGCCCCGCT
CAACTGGCGCAGCGCGCAGATCCAGTCGCGCGACGACGCCCAGCTGATGCTGGACAAGGTGAAAAACTATTTTCGTCTTC
ATGAGCCGAGCCACCCGGCGCCGCTGATGATCGATCGGGTCCAGCGGTTGATTACGCTGGACTTTATGCAAATCGTCCGC
GATTTGGCGCCCGATGGGCTTAACCAACTGGAGACCATTCTCGGTCGCCCCGACAACGAGGAGAACAGCTAG