Detailed information of component protein
Summary
| Component ID | T6CP015750 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01264  (Type i3) |
| Strain | Serratia marcescens RM66262 |
| Replicon | chromosome |
| Sequence | Protein sequence (179 a.a.); Nucleotide sequence (537 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | RT90_RS02695 |
| Coordinate (Strand) | 583198..583734 (-) |
| NCBI ID | WP_033635026.1 |
| RefSeq | NZ_JWLO01000001 |
| Uniprot ID | A0A2W5LQD7_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 2.3e-57 | 14..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-178 | MSNSKSRSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKAVDPQASVEERKFMEIDVDNFDERMKSLKPRVAYQVDNTLTGEGKLNIDLTFESMEDFSPAAIARKVDALDNLLDARTQLSNLLSYMDGKNGAEELISKILQNPALLQSLTDAPKPAVNDENNERED |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9917 | - | - |
Protein sequence: 179 a.a.
>T6CP015750 NZ_JWLO01000001:c583734-583198 [Serratia marcescens] [TssB]
MSNSKSRSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKAVDPQASVEERKFMEIDVDNFDERMKSLK
PRVAYQVDNTLTGEGKLNIDLTFESMEDFSPAAIARKVDALDNLLDARTQLSNLLSYMDGKNGAEELISKILQNPALLQS
LTDAPKPAVNDENNERED*
MSNSKSRSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKAVDPQASVEERKFMEIDVDNFDERMKSLK
PRVAYQVDNTLTGEGKLNIDLTFESMEDFSPAAIARKVDALDNLLDARTQLSNLLSYMDGKNGAEELISKILQNPALLQS
LTDAPKPAVNDENNERED*
Nucleotide sequence: 537 bp
>T6CP015750 NZ_JWLO01000001:c583734-583198 [Serratia marcescens] [TssB]
ATGTCAAACTCGAAATCCCGCAGCGGGCAGAAATTCATCGCCCGCAACCGCGCGCCGCGCGTACAGATTGAATACGATGT
CGAAATTTATGGCGCAGAGCGCAAAATCCAGCTGCCGTTCGTGATGGGCGTGATGGCGGATCTGGTGGGGAAAGCGGTCG
ATCCGCAAGCCAGCGTGGAAGAGCGCAAGTTCATGGAGATCGACGTCGACAACTTCGACGAGCGCATGAAATCGCTGAAG
CCGCGCGTCGCTTATCAGGTCGACAACACCCTGACCGGCGAAGGCAAGCTGAACATCGATCTGACCTTCGAAAGCATGGA
AGACTTCTCCCCCGCCGCCATCGCCCGCAAGGTCGACGCGCTGGACAATCTGCTGGACGCCCGCACCCAGCTTTCCAACC
TGCTGTCCTACATGGACGGCAAGAACGGTGCCGAAGAGCTGATCTCCAAGATCCTGCAAAATCCGGCGCTGCTGCAATCC
CTGACCGACGCGCCAAAGCCGGCGGTTAACGACGAAAACAACGAGCGTGAGGATTAA
ATGTCAAACTCGAAATCCCGCAGCGGGCAGAAATTCATCGCCCGCAACCGCGCGCCGCGCGTACAGATTGAATACGATGT
CGAAATTTATGGCGCAGAGCGCAAAATCCAGCTGCCGTTCGTGATGGGCGTGATGGCGGATCTGGTGGGGAAAGCGGTCG
ATCCGCAAGCCAGCGTGGAAGAGCGCAAGTTCATGGAGATCGACGTCGACAACTTCGACGAGCGCATGAAATCGCTGAAG
CCGCGCGTCGCTTATCAGGTCGACAACACCCTGACCGGCGAAGGCAAGCTGAACATCGATCTGACCTTCGAAAGCATGGA
AGACTTCTCCCCCGCCGCCATCGCCCGCAAGGTCGACGCGCTGGACAATCTGCTGGACGCCCGCACCCAGCTTTCCAACC
TGCTGTCCTACATGGACGGCAAGAACGGTGCCGAAGAGCTGATCTCCAAGATCCTGCAAAATCCGGCGCTGCTGCAATCC
CTGACCGACGCGCCAAAGCCGGCGGTTAACGACGAAAACAACGAGCGTGAGGATTAA