Detailed information of component protein


Summary

Component ID T6CP015749
Component protein type TssC
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (502 a.a.); Nucleotide sequence (1506 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02690
Coordinate (Strand) 581689..583194 (-)
NCBI ID 515494005
RefSeq NZ_JWLO01000001
Uniprot ID A0A2V4GN28_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 7.5e-137 69..371
VipB_2 PF18945.2 3.8e-45 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-501 MSNSPQQQNALQTTETFSSDEFSALLNKEFRPKTDQAKEAVENAVKTLAQQALENTVTVSSDAYRTIQALIAEIDEKLSQQINQIIHHDDFQKLEGAWHGLHYLVNNSETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKVYEEEYGQFGGEPFGCLVGDYYFDHSPQDVELLGEMAKIGAASHCPFIAGTAPSVMQMESWQELSNPRDLTKIFQNTEYAAWRSLRESEDARYLGLVMPRFLARLPYGIRTNPVDEFDFEEDTDGATHGNYTWTNAAYAMAANINRSFKEFGWCTAIRGVESGGAVENLPCHTFPSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYYDADASANAQLSARLPYLFACCRFAHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKSRKPLAAAEVQVEEIEDNPGYYSAKFFLRPHYQLEGLTVSLRLVSKLPSLKQNDAS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9833 - -


  Protein sequence: 502 a.a.    

>T6CP015749 NZ_JWLO01000001:c583194-581689 [Serratia marcescens] [TssC]
MSNSPQQQNALQTTETFSSDEFSALLNKEFRPKTDQAKEAVENAVKTLAQQALENTVTVSSDAYRTIQALIAEIDEKLSQ
QINQIIHHDDFQKLEGAWHGLHYLVNNSETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKVYEEEYGQFGGEPF
GCLVGDYYFDHSPQDVELLGEMAKIGAASHCPFIAGTAPSVMQMESWQELSNPRDLTKIFQNTEYAAWRSLRESEDARYL
GLVMPRFLARLPYGIRTNPVDEFDFEEDTDGATHGNYTWTNAAYAMAANINRSFKEFGWCTAIRGVESGGAVENLPCHTF
PSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYYDADASANAQLSARLPYLFACCRF
AHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKSRKPLAAAEVQVEEIEDNPGYYSAKFFLRPHYQLE
GLTVSLRLVSKLPSLKQNDAS*

  Nucleotide sequence: 1506 bp    

>T6CP015749 NZ_JWLO01000001:c583194-581689 [Serratia marcescens] [TssC]
ATGAGCAACTCGCCTCAGCAACAAAATGCGTTGCAGACCACCGAGACTTTTTCCAGCGATGAATTCAGCGCGCTGCTGAA
CAAAGAGTTCCGGCCGAAGACCGATCAGGCCAAAGAAGCGGTCGAGAACGCGGTGAAAACCCTGGCGCAGCAGGCGCTGG
AAAACACCGTCACCGTTTCTTCCGATGCCTACCGCACCATCCAGGCGCTGATTGCGGAAATCGACGAAAAGCTGTCGCAG
CAGATCAACCAGATCATTCACCACGACGACTTCCAGAAGCTGGAAGGCGCCTGGCACGGCCTGCATTATCTGGTCAACAA
CTCCGAAACCGACGAGATGCTGAAGATCCGCTTCATGAGCATTTCCAAGCAGGAGCTGGGCCGCACGCTGAAGCGTTATA
AAGGCGTGGGCTGGGACCAGAGCCCGATCTTCAAGAAAGTCTACGAAGAAGAGTATGGCCAGTTCGGCGGCGAACCGTTC
GGCTGCCTGGTGGGCGACTACTACTTCGATCACAGCCCGCAGGACGTGGAGCTGCTGGGCGAAATGGCCAAGATCGGCGC
CGCCTCGCACTGCCCGTTCATCGCCGGCACCGCGCCAAGCGTGATGCAGATGGAGTCCTGGCAGGAGCTCTCCAACCCGC
GCGATCTGACCAAGATTTTCCAGAACACCGAGTACGCCGCCTGGCGCAGCCTGCGCGAGTCGGAAGACGCGCGCTACCTG
GGCCTGGTGATGCCGCGCTTCCTGGCGCGCCTGCCGTACGGCATCCGCACCAACCCGGTGGACGAGTTTGACTTCGAAGA
AGACACCGACGGCGCGACCCACGGCAACTACACCTGGACCAACGCCGCCTACGCCATGGCCGCCAACATCAACCGTTCGT
TCAAAGAGTTCGGCTGGTGCACCGCCATTCGCGGGGTGGAATCCGGCGGCGCGGTGGAAAACCTGCCGTGCCACACCTTC
CCGAGCGACGACGGCGGCGTGGACATGAAGTGCCCGACTGAGATCGCCATCAGCGATCGCCGCGAAGCCGAGCTGGCCAA
AAACGGCTTTATGCCGCTGGTGCACCGCAAAAACTCCGACTTCGCCGCCTTTATCGGCGCGCAGTCGCTGCAGAAGCCGG
CGGAATACTACGATGCCGACGCCTCCGCCAATGCCCAGCTTTCCGCGCGCCTACCGTACCTGTTCGCCTGCTGCCGCTTC
GCGCATTACCTGAAGTGCATCGTGCGCGACAAAATTGGCTCCTTCCGCGAGCGCGACGACATGGAACGCTGGCTGAACGA
CTGGATCATGAACTACGTGGACGGCGATCCGGCCAACTCCTCGCAGGAAACCAAGTCGCGCAAACCGCTGGCCGCGGCGG
AAGTGCAGGTGGAAGAGATCGAAGACAACCCGGGCTATTACAGCGCCAAGTTCTTCCTGCGCCCGCACTACCAGCTGGAA
GGCCTGACCGTCTCCCTGCGCCTGGTGTCGAAGCTGCCTTCGCTGAAGCAAAACGACGCGTCCTGA