Detailed information of component protein


Summary

Component ID T6CP015747
Component protein type TagH
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (577 a.a.); Nucleotide sequence (1731 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02665
Coordinate (Strand) 576223..577953 (-)
NCBI ID 746532437
RefSeq NZ_JWLO01000001
Uniprot ID UPI0005731802
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 3.7e-07 27..93
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-576 MRFSIVKNKSGQVPPQSSCDFLPPGGTIGRSVDNNLVLPDEERAISRLQAIVHISADGECRITNRGNVTRVLLNDIPLERGRQVELQDGDVLGIDDYQIEVSALQQHAAPQAQPVAKAAAVAAAAAPAAAAKEKSAAPIPNEIWDSLVEEFTPNAPAAATATPPPVANPGNHPLLDTPARELNPADPLAQLAGDVDLRQLQQQQTDPAALFNTDTTFEREHILADTTPSALLAEQAAPPRPAAPTQKTQQPEQELDPLALFGGSSAPASPEALNSNDPLGLLMGGAVPLAQPEEPVQPPAPPIAAQPQAPRPQPTPPPVQIPEPQPQPAPQFSQQEPPVQPPRPRQGNRLGIDPVAYQSAQRQHAAAPNGDTLEGPLLAALLQGIGLDDLQPQPHFDEQQIRQAGRLLSLFSQGTVALLSSRSILKRGVKAEMTMILDEANNPFKLLPSGKTVLMQMFGSQMPGFMPPEQAVRDALIDLQAHQLGMIAGIRAIIAAMLQSFNPERLEEEARKEGVAPRLSLPANRKAALWDYFVKNYQQTSGEIEDDFHTLFGEAFLHAYDVEVNQYKDSQTKPDA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9486 - -


  Protein sequence: 577 a.a.    

>T6CP015747 NZ_JWLO01000001:c577953-576223 [Serratia marcescens] [TagH]
MRFSIVKNKSGQVPPQSSCDFLPPGGTIGRSVDNNLVLPDEERAISRLQAIVHISADGECRITNRGNVTRVLLNDIPLER
GRQVELQDGDVLGIDDYQIEVSALQQHAAPQAQPVAKAAAVAAAAAPAAAAKEKSAAPIPNEIWDSLVEEFTPNAPAAAT
ATPPPVANPGNHPLLDTPARELNPADPLAQLAGDVDLRQLQQQQTDPAALFNTDTTFEREHILADTTPSALLAEQAAPPR
PAAPTQKTQQPEQELDPLALFGGSSAPASPEALNSNDPLGLLMGGAVPLAQPEEPVQPPAPPIAAQPQAPRPQPTPPPVQ
IPEPQPQPAPQFSQQEPPVQPPRPRQGNRLGIDPVAYQSAQRQHAAAPNGDTLEGPLLAALLQGIGLDDLQPQPHFDEQQ
IRQAGRLLSLFSQGTVALLSSRSILKRGVKAEMTMILDEANNPFKLLPSGKTVLMQMFGSQMPGFMPPEQAVRDALIDLQ
AHQLGMIAGIRAIIAAMLQSFNPERLEEEARKEGVAPRLSLPANRKAALWDYFVKNYQQTSGEIEDDFHTLFGEAFLHAY
DVEVNQYKDSQTKPDA*

  Nucleotide sequence: 1731 bp    

>T6CP015747 NZ_JWLO01000001:c577953-576223 [Serratia marcescens] [TagH]
ATGCGATTTTCCATTGTAAAAAATAAAAGCGGCCAGGTTCCGCCGCAGAGCAGTTGCGATTTTCTGCCGCCGGGCGGCAC
CATCGGCCGCAGCGTGGACAACAACCTGGTGCTGCCGGACGAAGAGCGCGCCATTTCCCGTCTGCAGGCGATCGTGCATA
TTTCCGCTGACGGCGAATGCCGCATCACTAACCGCGGCAACGTTACCCGCGTGCTGCTGAACGACATTCCGCTGGAACGT
GGCCGCCAGGTTGAACTGCAGGACGGCGACGTGCTCGGCATCGACGATTACCAGATTGAAGTCAGCGCGCTGCAACAGCA
CGCCGCGCCACAGGCTCAACCGGTGGCCAAGGCCGCCGCCGTTGCCGCTGCTGCGGCTCCTGCAGCCGCCGCCAAAGAAA
AATCCGCCGCGCCAATCCCCAACGAAATCTGGGACAGCCTGGTGGAAGAATTCACGCCGAATGCGCCGGCCGCCGCCACA
GCCACACCGCCGCCGGTCGCCAATCCAGGCAACCACCCGCTGCTGGATACCCCCGCTCGCGAGCTGAACCCGGCCGATCC
GCTGGCTCAGCTGGCGGGCGATGTCGATCTGCGCCAGCTGCAGCAGCAGCAAACCGATCCGGCGGCGCTGTTCAACACCG
ACACCACCTTTGAGCGCGAACACATCCTGGCCGATACCACCCCCAGCGCGCTGCTGGCGGAGCAGGCTGCGCCGCCGCGC
CCGGCGGCTCCCACCCAAAAAACGCAGCAACCGGAGCAAGAGCTGGATCCGCTGGCGCTGTTTGGCGGTTCATCCGCACC
CGCTTCGCCAGAAGCGTTGAACAGCAACGATCCGCTGGGGCTGCTGATGGGCGGCGCCGTGCCGCTGGCCCAGCCGGAGG
AACCGGTACAGCCGCCCGCGCCGCCGATCGCCGCACAACCGCAAGCGCCGCGCCCACAGCCGACGCCACCGCCCGTGCAA
ATCCCCGAGCCGCAGCCCCAACCCGCGCCGCAGTTCAGCCAGCAGGAACCACCCGTGCAGCCGCCGCGCCCGCGCCAGGG
CAACCGCCTGGGCATCGATCCGGTCGCCTACCAGTCCGCCCAGCGGCAACATGCCGCCGCGCCGAATGGCGACACATTGG
AAGGGCCGTTGCTGGCGGCGCTGTTGCAAGGCATCGGCCTCGACGATCTGCAGCCACAGCCGCACTTCGACGAACAACAG
ATCCGCCAGGCTGGTCGCCTGCTGAGCCTGTTCTCGCAAGGCACCGTCGCCCTGCTCTCATCCCGCTCGATCCTCAAGCG
CGGCGTGAAGGCCGAGATGACCATGATCCTCGACGAGGCCAACAACCCGTTCAAGCTGCTGCCTTCGGGCAAAACGGTGC
TGATGCAGATGTTCGGCAGCCAGATGCCGGGCTTTATGCCGCCGGAACAGGCGGTGCGCGACGCGCTGATCGACCTGCAG
GCGCACCAGCTGGGGATGATCGCCGGTATTCGCGCCATCATCGCCGCCATGCTGCAGTCGTTCAACCCGGAGCGTCTCGA
AGAGGAAGCGCGCAAGGAAGGCGTGGCGCCGCGTCTGTCGCTGCCCGCCAACCGCAAGGCTGCGCTGTGGGACTACTTCG
TGAAGAACTATCAGCAAACCTCCGGCGAGATCGAGGACGATTTCCACACCCTGTTCGGCGAAGCCTTCCTGCACGCCTAT
GACGTTGAAGTGAATCAATACAAAGACTCACAGACCAAACCGGACGCGTAA