Detailed information of component protein
Summary
| Component ID | T6CP015746 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS01264  (Type i3) |
| Strain | Serratia marcescens RM66262 |
| Replicon | chromosome |
| Sequence | Protein sequence (268 a.a.); Nucleotide sequence (804 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | RT90_RS02650 |
| Coordinate (Strand) | 573598..574401 (-) |
| NCBI ID | 746532430 |
| RefSeq | NZ_JWLO01000001 |
| Uniprot ID | UPI00057587EE |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 2.6e-41 | 143..261 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-267 | MLQGQSIGAAITAVENEIKGKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFAGTAAPALLRQDQPWLKLMVQALHQDAQGAAEQAQALRDEALEAAPAGAGRLTLAEGDQERQLRFDWLTDGDGRLGPVCELALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLAEDSDDALLLGKRTEWQPLGDGTHYAGLGLKTWLSESDEFPLHSLRQLSFDASA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9359 | - | - |
Protein sequence: 268 a.a.
>T6CP015746 NZ_JWLO01000001:c574401-573598 [Serratia marcescens] [TagJ]
MLQGQSIGAAITAVENEIKGKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFA
GTAAPALLRQDQPWLKLMVQALHQDAQGAAEQAQALRDEALEAAPAGAGRLTLAEGDQERQLRFDWLTDGDGRLGPVCEL
ALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLAEDSDDALLLGKRTEWQPLGDGTHYAG
LGLKTWLSESDEFPLHSLRQLSFDASA*
MLQGQSIGAAITAVENEIKGKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFA
GTAAPALLRQDQPWLKLMVQALHQDAQGAAEQAQALRDEALEAAPAGAGRLTLAEGDQERQLRFDWLTDGDGRLGPVCEL
ALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLAEDSDDALLLGKRTEWQPLGDGTHYAG
LGLKTWLSESDEFPLHSLRQLSFDASA*
Nucleotide sequence: 804 bp
>T6CP015746 NZ_JWLO01000001:c574401-573598 [Serratia marcescens] [TagJ]
ATGCTGCAAGGCCAGTCGATCGGCGCGGCCATCACCGCCGTCGAAAACGAGATCAAGGGAAAACCGGCGGATGCCGACCT
ACGCGCCGCGCTGGTGCAACTGCTGTGCCTGAGCGGCAACTGGACGCGCGCCAACGCGCAGCTGAAATCCTGGCAGGCGC
TGAAACCGATAGCTCAACCGACCACGCTGCTGCTGATGCAGTCGGTCAACGCCGAGCTGCAACGCCAGGCGGTGTTCGCC
GGCACGGCCGCGCCGGCGCTGCTGCGGCAGGATCAGCCCTGGCTGAAACTGATGGTGCAGGCGCTGCATCAGGATGCACA
AGGGGCGGCCGAACAGGCCCAGGCGTTGCGCGATGAAGCGCTGGAAGCCGCCCCGGCCGGCGCCGGGCGATTAACGCTGG
CCGAAGGCGACCAAGAACGGCAGCTGCGTTTCGACTGGCTGACCGACGGTGACGGCCGCCTCGGCCCGGTGTGCGAGCTG
GCGCTGAACGGCGTTTACTACTGGCTGCCGTTCGCCGACATCGCCGCGATCCAGTTCCAGGCGCCGCAGAGCGCCATCGA
TCTGGTGTGGAGCCATGCGCTGGTGCGCCTGACCGACGGCCGCGAACAGGTGTGCCAACTGCCCGCCCGCTACCCGCTGG
CCGAAGACAGCGACGACGCGCTGCTGCTGGGCAAACGCACCGAATGGCAGCCGCTGGGCGACGGCACCCACTATGCGGGG
CTGGGCTTGAAGACCTGGCTCAGCGAAAGCGACGAATTCCCGCTGCACAGCCTGCGGCAGCTGAGCTTCGACGCGAGCGC
CTGA
ATGCTGCAAGGCCAGTCGATCGGCGCGGCCATCACCGCCGTCGAAAACGAGATCAAGGGAAAACCGGCGGATGCCGACCT
ACGCGCCGCGCTGGTGCAACTGCTGTGCCTGAGCGGCAACTGGACGCGCGCCAACGCGCAGCTGAAATCCTGGCAGGCGC
TGAAACCGATAGCTCAACCGACCACGCTGCTGCTGATGCAGTCGGTCAACGCCGAGCTGCAACGCCAGGCGGTGTTCGCC
GGCACGGCCGCGCCGGCGCTGCTGCGGCAGGATCAGCCCTGGCTGAAACTGATGGTGCAGGCGCTGCATCAGGATGCACA
AGGGGCGGCCGAACAGGCCCAGGCGTTGCGCGATGAAGCGCTGGAAGCCGCCCCGGCCGGCGCCGGGCGATTAACGCTGG
CCGAAGGCGACCAAGAACGGCAGCTGCGTTTCGACTGGCTGACCGACGGTGACGGCCGCCTCGGCCCGGTGTGCGAGCTG
GCGCTGAACGGCGTTTACTACTGGCTGCCGTTCGCCGACATCGCCGCGATCCAGTTCCAGGCGCCGCAGAGCGCCATCGA
TCTGGTGTGGAGCCATGCGCTGGTGCGCCTGACCGACGGCCGCGAACAGGTGTGCCAACTGCCCGCCCGCTACCCGCTGG
CCGAAGACAGCGACGACGCGCTGCTGCTGGGCAAACGCACCGAATGGCAGCCGCTGGGCGACGGCACCCACTATGCGGGG
CTGGGCTTGAAGACCTGGCTCAGCGAAAGCGACGAATTCCCGCTGCACAGCCTGCGGCAGCTGAGCTTCGACGCGAGCGC
CTGA