Detailed information of component protein


Summary

Component ID T6CP015744
Component protein type TssF
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (629 a.a.); Nucleotide sequence (1887 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02640
Coordinate (Strand) 571129..573015 (-)
NCBI ID 746532425
RefSeq NZ_JWLO01000001
Uniprot ID UPI0005376896
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 9.3e-230 1..625
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-628 MDSKLLDYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRVQLKMDAEFPRFSQRLLEIIYPNYLSPTPSMAIAELQPDSSKGDISNGFVVPRGTMMDSQTLKKSGITCSYATAHDVTLQPVRIAAVELGGIPADIPLASLGLQHSGCVSALRIRLECYESVTLNNLQLDQLMFYLAGPDMQAQQLLELLMQHSVGLVCQTVEAQPQRRALALDGLRQEGFAADQALLPNDLRNFEGYRLLQEYFAFPARFQFFSVNGLRPLLQSVREGKKALRQFEIVVLLDRHDAALERVVDAAHLALHCTPVINLFPKVAERIAINEKNHEYHLVVDNIRPLDYEVFSVQRLGGSASEKRYEQEFRPFYSTLSADDGNYGAYFSLRREQRTLSEHARRYGTRTGYAGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLLQQDQGNFVMPDSIPIKQVSLRKGPTPPRPALAEGMITWRLISQLQLNYLSMMDGDPEQGAASLRQLLGLYGNLSEPAIAKQIQGVRHCNLRPVYRRVPEPGPIVFARGIAIDLTVDEQAFSGNSPYLLGSVLERLFSRLVAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 629 a.a.    

>T6CP015744 NZ_JWLO01000001:c573015-571129 [Serratia marcescens] [TssF]
MDSKLLDYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRVQLKMDAEFPRFSQRLLEIIY
PNYLSPTPSMAIAELQPDSSKGDISNGFVVPRGTMMDSQTLKKSGITCSYATAHDVTLQPVRIAAVELGGIPADIPLASL
GLQHSGCVSALRIRLECYESVTLNNLQLDQLMFYLAGPDMQAQQLLELLMQHSVGLVCQTVEAQPQRRALALDGLRQEGF
AADQALLPNDLRNFEGYRLLQEYFAFPARFQFFSVNGLRPLLQSVREGKKALRQFEIVVLLDRHDAALERVVDAAHLALH
CTPVINLFPKVAERIAINEKNHEYHLVVDNIRPLDYEVFSVQRLGGSASEKRYEQEFRPFYSTLSADDGNYGAYFSLRRE
QRTLSEHARRYGTRTGYAGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLLQQDQGNFVMPDSIPIKQVSLRKG
PTPPRPALAEGMITWRLISQLQLNYLSMMDGDPEQGAASLRQLLGLYGNLSEPAIAKQIQGVRHCNLRPVYRRVPEPGPI
VFARGIAIDLTVDEQAFSGNSPYLLGSVLERLFSRLVAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI*

  Nucleotide sequence: 1887 bp    

>T6CP015744 NZ_JWLO01000001:c573015-571129 [Serratia marcescens] [TssF]
ATGGACAGTAAACTTTTAGACTATTACAACCGCGAGCTGGCCTATCTGCGCGAGATGGGCGCCGAGTTCGCCGAACAGTA
CCCGAAGGTCGCGGGCCGTCTCGGCATGCGCGGCATCGACGTGGCGGATCCCTATATCGAGCGCCTGATGGAAGGCTTCG
CCTTCCTCACCTCGCGCGTGCAGCTGAAAATGGACGCCGAGTTTCCGCGCTTTTCTCAGCGCTTGCTGGAGATCATCTAC
CCCAACTACCTGTCGCCGACGCCGTCGATGGCGATCGCCGAACTGCAGCCGGACAGCAGCAAAGGTGACATCAGCAACGG
TTTCGTGGTGCCGCGCGGCACCATGATGGACAGCCAGACGCTGAAGAAAAGCGGCATCACCTGCAGCTACGCCACCGCCC
ATGACGTCACGCTGCAGCCGGTGCGCATCGCCGCCGTCGAGCTGGGCGGCATTCCGGCCGATATCCCGTTGGCCTCGCTG
GGGCTGCAGCACAGCGGCTGCGTCAGCGCGCTGCGCATTCGTCTCGAGTGCTACGAAAGCGTGACGCTCAACAACCTGCA
GCTGGATCAGTTGATGTTTTACCTGGCCGGGCCGGACATGCAGGCGCAGCAGCTGCTGGAACTGCTGATGCAGCACAGCG
TCGGGCTTGTCTGCCAAACGGTGGAGGCGCAGCCGCAGCGGCGGGCGCTGGCGCTGGACGGGCTGCGGCAGGAGGGCTTC
GCCGCCGATCAGGCGCTGCTGCCCAACGACCTGCGCAACTTCGAAGGCTATCGGTTGCTGCAGGAGTACTTCGCCTTCCC
GGCGCGCTTCCAGTTCTTCAGCGTCAACGGCCTGCGTCCGCTGCTGCAGAGCGTGCGCGAAGGGAAAAAGGCGCTGCGCC
AGTTCGAAATCGTGGTGCTGCTGGATCGGCACGACGCCGCGCTGGAGCGGGTGGTCGACGCCGCCCATTTGGCGCTGCAC
TGCACGCCGGTGATCAACCTGTTTCCGAAGGTCGCCGAACGCATCGCGATCAACGAAAAAAACCACGAATACCATCTGGT
GGTCGACAATATCCGGCCGCTGGATTACGAAGTGTTCTCGGTGCAGCGGCTCGGCGGCAGCGCCAGCGAAAAACGCTACG
AGCAGGAGTTTCGGCCGTTTTACAGCACCCTGAGCGCGGACGACGGCAACTATGGCGCCTACTTCTCGCTGCGGCGCGAA
CAGCGCACGCTGTCGGAGCACGCCCGCCGCTACGGCACCCGCACCGGCTATGCCGGTTCGGAAGTGTTCGTGTCGCTGGT
GGACGAGCGGCAATCGCCGTGGCACAGCGATCTGAAATACCTCACCGCCGACGTGCTGTGCACCAGCCGCGACCTGCCGT
TGATGCTGCTGCAACAGGATCAGGGCAACTTTGTGATGCCCGATTCGATTCCGATCAAGCAGGTCTCGCTGCGCAAAGGC
CCCACCCCGCCGCGCCCGGCGCTGGCCGAAGGCATGATCACCTGGCGGCTGATCAGCCAGCTGCAGCTGAACTACCTCAG
CATGATGGACGGCGATCCGGAACAGGGCGCCGCCAGCCTGCGCCAGCTGCTGGGGCTGTACGGCAACCTGAGCGAGCCGG
CGATCGCCAAACAGATCCAGGGCGTGCGCCACTGCAACCTGCGGCCGGTCTATCGGCGAGTGCCGGAGCCGGGCCCCATC
GTGTTCGCGCGCGGCATCGCCATCGATCTGACGGTCGATGAGCAGGCGTTCTCCGGCAACAGCCCTTATCTACTCGGCAG
CGTGCTGGAGCGCCTGTTCTCACGCCTGGTGGCGATGAACACCTTCACCGAGATGACGCTCTCCAGCCAGCAGCGCGGCG
AAATCGCCCACTGGCAGGCGCGCATGGGCAAAAGGACGCTGATATGA