Detailed information of component protein


Summary

Component ID T6CP015742
Component protein type TssH
T6SS ID (Type) T6SS01264 experimental (Type i3)
Strain Serratia marcescens RM66262
Replicon chromosome
Sequence Protein sequence (885 a.a.); Nucleotide sequence (2655 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RT90_RS02630
Coordinate (Strand) 567351..570005 (-)
NCBI ID 746532421
RefSeq NZ_JWLO01000001
Uniprot ID UPI000573BCF5
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.1e-37 615..780
AAA_lid_9 PF17871.3 2.4e-26 365..457
ClpB_D2-small PF10431.11 9.5e-14 788..863
AAA PF00004.31 1.9e-09 226..358
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-884 MSEISRSVLFGKLDSLLFTSLESATAFCKLRGNPYVELAHWLHQLMQSPDGDLQQIVRHFALDEAQLARDIVEALDRLPRGASAISDLSEHIDSAVERAWVYGSLKFGAARIRGGHLLLGILKTYSLRHLLKAISPQFERINADLLMEQFAAITAHSAENAQDAPAESGAENVSGAPRSGESVLAQYAQDLTARARNGEIDPVAGRDEEIRQIIDILMRRRQNNPLLTGEAGVGKTAVVEGLALRIVAGDVPPQLRDVKLCLLDIGMLQAGAGVKGEFEKRLQAVIDEVQSSPTPIILFIDEIHTLIGAGGAQGTGDAANLLKPALARGQLRTLGATTWSEYKKYIEKDPALTRRFQVVQVHEPSEDKALLMLRSTVSPLEQHHRVLLLDEAVDAAVRLSHRYIPARQLPDKAVALLDTACARVAVSQHAEPAQVEDCRHRIDALQIELDIARREAKVGIGDPLRPQEIEAQLTALRQELEQLTDRWQQELALIQEIITLRAQLHQQEAEPADEETQAGPDADALRAQLGELQQQLSALQGEAPLIFAAVDANIVAAVVADWTGIPLGRMVKNEIEAVLQLSDTLNQRVIGQRHALDLIARRVRTSRARLDDPNKPVGVFLLAGPSGVGKTETALALAETLYGGEQNVITINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTIIILTSNVGTDLIAGLCSDPELLPEPDALSGALRQPLLSVFPAALLGRLLVVPYYPLTDATLGNIVRLQLGRIQRRLAENHDIVCTFDDAVIEQIVSRCTEVESGGRMVDAILTNTLLPQISHTLLTGSANDQRYRQLHIALQNNEFICQFQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9624 - -


  Protein sequence: 885 a.a.    

>T6CP015742 NZ_JWLO01000001:c570005-567351 [Serratia marcescens] [TssH]
MSEISRSVLFGKLDSLLFTSLESATAFCKLRGNPYVELAHWLHQLMQSPDGDLQQIVRHFALDEAQLARDIVEALDRLPR
GASAISDLSEHIDSAVERAWVYGSLKFGAARIRGGHLLLGILKTYSLRHLLKAISPQFERINADLLMEQFAAITAHSAEN
AQDAPAESGAENVSGAPRSGESVLAQYAQDLTARARNGEIDPVAGRDEEIRQIIDILMRRRQNNPLLTGEAGVGKTAVVE
GLALRIVAGDVPPQLRDVKLCLLDIGMLQAGAGVKGEFEKRLQAVIDEVQSSPTPIILFIDEIHTLIGAGGAQGTGDAAN
LLKPALARGQLRTLGATTWSEYKKYIEKDPALTRRFQVVQVHEPSEDKALLMLRSTVSPLEQHHRVLLLDEAVDAAVRLS
HRYIPARQLPDKAVALLDTACARVAVSQHAEPAQVEDCRHRIDALQIELDIARREAKVGIGDPLRPQEIEAQLTALRQEL
EQLTDRWQQELALIQEIITLRAQLHQQEAEPADEETQAGPDADALRAQLGELQQQLSALQGEAPLIFAAVDANIVAAVVA
DWTGIPLGRMVKNEIEAVLQLSDTLNQRVIGQRHALDLIARRVRTSRARLDDPNKPVGVFLLAGPSGVGKTETALALAET
LYGGEQNVITINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMED
GEGRHIDFRNTIIILTSNVGTDLIAGLCSDPELLPEPDALSGALRQPLLSVFPAALLGRLLVVPYYPLTDATLGNIVRLQ
LGRIQRRLAENHDIVCTFDDAVIEQIVSRCTEVESGGRMVDAILTNTLLPQISHTLLTGSANDQRYRQLHIALQNNEFIC
QFQA*

  Nucleotide sequence: 2655 bp    

>T6CP015742 NZ_JWLO01000001:c570005-567351 [Serratia marcescens] [TssH]
ATGTCTGAAATCAGCCGCTCGGTATTATTTGGCAAACTGGATAGCCTGTTATTCACCTCTCTGGAAAGTGCGACGGCGTT
TTGCAAGCTGCGCGGTAACCCCTACGTCGAACTGGCGCACTGGCTGCATCAGCTGATGCAATCGCCGGACGGCGATCTGC
AGCAGATCGTCCGCCACTTCGCGCTGGACGAGGCGCAGCTGGCGCGCGATATCGTCGAGGCGCTCGATCGCCTGCCCCGC
GGCGCCAGCGCCATTTCCGATCTGTCCGAGCACATCGACAGCGCGGTAGAACGCGCCTGGGTCTATGGCTCATTGAAATT
CGGCGCGGCGCGCATCCGCGGCGGCCACCTGCTGCTCGGCATCCTGAAAACCTACAGCCTGCGCCATCTGCTGAAGGCCA
TTTCCCCACAGTTCGAGCGCATCAACGCCGATCTGTTGATGGAGCAGTTCGCCGCCATCACCGCTCACTCGGCGGAAAAC
GCCCAGGATGCGCCGGCGGAAAGCGGCGCCGAGAACGTATCCGGCGCGCCGCGCAGCGGTGAAAGCGTGCTGGCGCAGTA
TGCCCAGGATCTGACCGCCAGAGCGCGCAACGGCGAGATCGATCCGGTGGCCGGGCGCGATGAGGAGATCCGGCAAATCA
TCGATATCCTGATGCGCCGCCGCCAGAACAACCCGCTGCTGACCGGCGAGGCCGGCGTCGGGAAAACCGCGGTGGTGGAA
GGCCTGGCGCTGCGCATCGTGGCCGGCGACGTGCCGCCGCAGCTGCGCGACGTGAAACTGTGCCTGCTGGACATCGGCAT
GCTGCAGGCCGGCGCCGGCGTCAAAGGCGAGTTTGAAAAACGGCTGCAGGCGGTGATCGACGAAGTGCAGTCCAGCCCGA
CGCCGATCATCCTGTTTATCGACGAAATTCACACCCTGATCGGCGCCGGCGGCGCCCAGGGCACCGGCGACGCCGCCAAC
CTGCTGAAACCGGCGCTGGCGCGCGGCCAGCTGCGCACCCTCGGCGCCACCACCTGGTCGGAATACAAGAAATACATCGA
GAAGGATCCGGCGCTCACCCGCCGTTTCCAGGTGGTGCAGGTGCATGAACCGAGCGAAGACAAAGCGCTGCTGATGCTGC
GCAGCACCGTCAGCCCGCTGGAGCAACACCACCGCGTGCTGCTGCTGGATGAAGCGGTGGACGCCGCGGTGCGGCTTTCG
CATCGCTATATTCCTGCCCGCCAGTTGCCGGACAAGGCGGTGGCGCTGCTGGATACCGCCTGCGCGCGCGTGGCGGTCAG
CCAACATGCCGAGCCTGCTCAGGTCGAAGACTGCCGCCACCGCATCGATGCGCTGCAGATAGAGTTGGATATCGCCCGCC
GCGAGGCCAAGGTCGGCATCGGCGATCCCCTGCGCCCGCAGGAGATTGAAGCCCAGCTGACCGCGCTGCGCCAGGAATTG
GAACAGCTGACCGACCGCTGGCAGCAGGAGCTGGCGCTGATCCAAGAGATCATCACACTGCGCGCACAGCTGCACCAACA
GGAAGCGGAGCCTGCCGACGAAGAGACGCAGGCTGGCCCTGACGCCGACGCGCTGCGTGCCCAGTTGGGCGAACTGCAGC
AGCAGTTGAGCGCGCTGCAGGGCGAAGCGCCGCTGATCTTCGCCGCCGTCGACGCCAACATCGTGGCGGCGGTAGTGGCC
GACTGGACCGGCATCCCGCTGGGCCGCATGGTGAAAAACGAGATTGAGGCGGTGCTGCAACTCTCCGACACCCTGAACCA
GCGCGTGATCGGCCAACGCCATGCGCTGGATCTGATCGCCCGCCGGGTGCGCACTTCGCGGGCGCGGCTGGACGATCCGA
ACAAGCCGGTCGGGGTGTTCCTGCTGGCCGGGCCGTCCGGCGTCGGCAAGACCGAAACCGCGCTGGCGCTGGCGGAAACC
CTGTACGGCGGCGAGCAGAACGTCATCACCATCAACATGAGCGAATTCCAGGAGTCGCACACCGTTTCGACGCTGAAAGG
CGCGCCCCCGGGCTATGTCGGCTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTGCGCCGCCGTCCTTACAGCGTGGTGC
TGCTGGACGAAATCGAGAAGGCGCACCCGGACGTGCATGAAATCTTCTTCCAGGTGTTCGACAAGGGCTGGATGGAGGAC
GGCGAAGGCCGCCATATCGATTTCCGCAACACCATCATCATCCTGACCTCCAACGTCGGCACCGATCTGATCGCCGGACT
GTGCAGCGATCCGGAGCTGCTGCCGGAGCCGGATGCGCTGAGCGGCGCACTGCGCCAGCCGCTGCTGTCGGTGTTCCCGG
CCGCCTTGCTCGGCCGCCTGCTGGTGGTGCCGTATTACCCGCTGACCGACGCCACGCTGGGCAACATCGTGCGCCTGCAG
CTGGGCCGCATCCAGCGTCGCCTGGCGGAGAATCACGACATCGTCTGCACCTTCGACGACGCGGTCATCGAGCAGATCGT
CAGCCGCTGCACCGAGGTGGAGTCCGGCGGCCGCATGGTCGACGCCATCCTGACCAACACCCTGCTGCCGCAGATCAGCC
ACACCCTGCTGACCGGCAGCGCCAACGACCAGCGCTATCGCCAGCTGCATATCGCGCTGCAGAACAACGAATTCATTTGT
CAATTTCAGGCATAA